New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2879381	42 (0.990)	3 (0.070)	3/254	NT	6.7%	coding (392/918 nt)	cas1	multifunctional nuclease Cas1
	?	NC_000913	= 2879386	43 (1.060)					coding (387/918 nt)	cas1	multifunctional nuclease Cas1

TTGATCGTATCGCCCTTTTCCCAGTCTTTCGGATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAGGCTGACCAGAAGCATAAACACG  >  NC_000913/2879243‑2879523                                                                                                                                           |                                                                                                                                               ttGATCGTATCGCCCTTTTCCCAGTCTTTCGGATCGTAGCGCAGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGCTGCCAGCACGCGACTGCCTTCTAGAGCTCGGAGTTGCTCTACGGACCGCCggac                                                                                                                                            >  2:731530/1‑141 (MQ=255) ttGACCGTATCGCCCTTTTCCCAGTCTTTCGGATCGTAGCGACGTCCATTCCAGGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGc                                                                                                                                            <  1:585905/143‑1 (MQ=255)   gATCGTATCGCCCTTTTCCCAGTCTTTCGGATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAg                                                                                                                                          >  1:322131‑M2/1‑142 (MQ=255)       gTATCGCCCGTGCCCCAGTCGTTCGGATCGGAGCGACGGCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAggcgc                                                                                                                                      >  1:151858‑M2/1‑138 (MQ=255)        tATCGCCCTTTTCCCAGTCTTTCGGATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGACTTCTATACCTCTGAGTTGCACTACGAAGCACCGGGCAGGCGCa                                                                                                                                     >  2:269553/1‑143 (MQ=255)         ctctaccTTTTGCCAGTCTTTCGGCTCGTAGCGACGTTCGTTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCTCGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAg                                                                                                                                    <  2:142179/138‑1 (MQ=255)                     ccAGTCTTTCGGATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCAAGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAAcc                                                                                                                        >  1:126374/1‑143 (MQ=255)                      cAGTCTTTCGGATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCg                                                                                                                       >  2:51089/1‑143 (MQ=255)                            ttCGGATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGGGTTGCTCTACGGGGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGtgc                                                                                                                 >  1:717971/1‑141 (MQ=255)                              cGGATCGTAGCGACGTCGATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGAATGCCTCCTATACCTCTGAGTTGCTCTCCGCAGAGCCGGGCACGCGCAGGTTCTCCACGACGAACTTCac                                                                                                               >  2:43899/1‑142 (MQ=255)                               ggATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATTCCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGAGCAAGATCTCCAAACCGaaaaacaaa                                                                                                              >  1:653502/1‑136 (MQ=255)                               ggATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTGCGCCAGAAGGGCTTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCaaa                                                                                                              <  1:735061/143‑1 (MQ=255)                                 cgcggcgcggcgtgcattCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGGAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCtgcccggcgctccgtagagcaactcagaggtataga                                                                                                            <  1:680130‑M1/137‑37 (MQ=255)                                 aTCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACa                                                                                                            >  1:704651/1‑143 (MQ=255)                                      ggccgggTCCATTCCGTGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCATGTTCTCCAAACCGAAGTTCAAACATTTta                                                                                                       <  2:337926/137‑1 (MQ=255)                                          aCGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTtacgta                                                                                                   <  2:244158/143‑1 (MQ=255)                                            gTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTtacgtacg                                                                                                 >  1:196962/1‑143 (MQ=255)                                                 ttccatGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATCCCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCACACATTTTACGGACGACCtt                                                                                            >  1:365992/1‑143 (MQ=255)                                                  tccatGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTc                                                                                           <  1:27602/143‑1 (MQ=255)                                                          aCGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCACGCGCAGGTTCTCCAAACCGAGGTTCAAACATTTTACGTACGACCTCCAGACGCaa                                                                                   >  1:737475/1‑143 (MQ=255)                                                            gCCGTATTGCTTCGCCAGAAGTGGGTAGGTTGCCAGCACGCGACTGCCTCAGATACGTCTGAGGTGCTCTACGGAGCGCAGGGCAGGCGCAGGTTCTACAAACCGAAGAAGAAAGAAATTACGAAGGAACCTGAGACGCaaag                                                                                 >  2:436234/1‑142 (MQ=255)                                                              cGTATGGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCt                                                                               <  1:248553/143‑1 (MQ=255)                                                                tATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTc                                                                             <  1:765027/143‑1 (MQ=255)                                                                    gCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATcc                                                                         >  2:115124/1‑143 (MQ=255)                                                                      ttCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCtgcccggcgctccgtagag                                                                                                                             <  2:421351‑M1/89‑20 (MQ=255)                                                                      ttCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCtgcccggcgctccgtagag                                                                                                                             >  1:421351‑M1/1‑70 (MQ=255)                                                                      ttCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCACACATTTTACGTACGACCTTCAGACGCAACTCTTCATCCag                                                                       >  1:507551/1‑143 (MQ=255)                                                                      ttCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCag                                                                       <  1:115124/143‑1 (MQ=255)                                                                       tCGCCGGAAGGGCGTAGGTTGCCCGGACGCGGCTGCCTTGTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCaga                                                                      <  2:310416/143‑1 (MQ=255)                                                                           cAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCCACCAAAGCaa                                                                  >  2:629395/1‑143 (MQ=255)                                                                             ggagggCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGGTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGt                                                                <  2:313864/138‑1 (MQ=255)                                                                                    ggaGGTTGCCCGCACGCGACTGCCTTCTATGCCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCt                                                         <  2:821677/141‑1 (MQ=255)                                                                                    gTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCt                                                         >  1:698929/1‑143 (MQ=255)                                                                                    gTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCt                                                         <  2:817748/143‑1 (MQ=255)                                                                                     tAGGTTGCCCGCACGCGATTGCGTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATGTGACGTACGACCTTCAGACGCAAATCGTCATCCAGGGCAAGTTTTGCCTg                                                        <  2:534665/143‑1 (MQ=255)                                                                                      cggTCGCCTGCACGCGACCGGCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGa                                                       <  2:243826/142‑1 (MQ=255)                                                                                            cccGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGCCGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGagc                                                 >  1:86691/1‑143 (MQ=255)                                                                                                        tGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGACGTTCAAACATTTTACGTACGACCTTCAGACGCGAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGaa                                     >  1:762073/1‑143 (MQ=255)                                                                                                        tGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGCTCAAACACTGTACGTACGACCTCCAGACGCAAATCTTCACCCAGAGCAAGTATGGCCCGAGAGAGCAGCCTATCTCaa                                     >  2:64112/1‑143 (MQ=255)                                                                                                            ttCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAAcgcg                                 <  1:51089/143‑1 (MQ=255)                                                                                                             tCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAggcgctccgtagagcaactcagaggtatagaaggcagtcgcgtgcgggcaacctccgcacttctggcgaagcaatacggcgtgacatggaatgcacgccgcgccgcg                                <  1:680130‑M2/143‑108 (MQ=255)                                                                                                              cTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTCTCTGAACGCGCa                               >  2:374156/1‑143 (MQ=255)                                                                                                                    ctctGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCa                         >  2:667381/1‑143 (MQ=255)                                                                                                                     tctGGGTTGCTCTACGGAGCGCCGGCCAGGCGCAGGTTCTCCAACCCGAAGTTCAAACATTTTACGTACGACCGTCCGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAg                        <  2:80316/143‑1 (MQ=255)                                                                                                                     tctGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAACTCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAg                        >  1:437243/1‑143 (MQ=255)                                                                                                                           ttGCTCTACGGAGCGCCGGGCAGGCGCAGATACTCCAAACCGAAGTTCAACAACTACACTCACTAGTGTGAGACACAAACCTCCATCCAGAGCAAGTTTTGCCCCACAGAGCAGCTTATCTGAACGCGCACCTCCACGCTGAc                  >  2:803491/1‑143 (MQ=255)                                                                                                                              ctctACGGAGCGCCGGGCAggcgctccgtagagcaactcagaggtatagaaggcagtcgcgtgcgggcaacctacgcacttctggcgaa                                                                     <  2:421351‑M2/89‑71 (MQ=255)                                                                                                                              ctctACGGAGCGCCGGGCAggcgctccgtagagcaactcagaggtatagaaggcagtcgcgtgcgggcaacctacgcacttctggcgaa                                                                     >  1:421351‑M2/1‑19 (MQ=255)                                                                                                                               tctACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGAACCGCCAGGCTGACCAGa              >  1:353839/1‑143 (MQ=255)                                                                                                                                ctACGGCGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATGTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAGGCTGACCAGaa             <  1:780114/143‑1 (MQ=255)                                                                                                                                 tACGGCGCGCCGGGCAGGCGCAGGTTCTCCAAGCCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAGGCTGACCAGAAg            <  2:225111/143‑1 (MQ=255)                                                                                                                                 tACGGAGCGCCGGGCAGGCGCAGGTTCTCCACACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAGGCTGACCAGAAg            <  1:28254/143‑1 (MQ=255)                                                                                                                                       gcgcCtgcccggcgctccgtagagcaactcagaggtatagaaggcagtcgcgtgcgggcaacctacgcacttctggcgaagcaatacggcgtgacatggaatggccgtcgctccgatccgaacgactggggcacgggcgatac      >  1:151858‑M1/1‑5 (MQ=255)                                                                                                                                       gcgcCGGGCAGGCGCAGGTTCTCCAAACCGAAGGTCAAACATTTTACGTAAAACTTCTAGTCGGTATTCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAGGCTGACCAGAAGCATaaa      <  1:819380/143‑1 (MQ=255)                                                                                                                                          ccGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAGGCTGACCAGAAGCATAAacac   <  1:696708/143‑1 (MQ=255)                                                                                                                                           ctgcccggcgctccgtagagcaactcagaggtatagaaggcagtcgcgtgcgggcaacctacgcacttctggcgaagcaatacggcgtgacatggaatggacgtcgctacgatccgaaagactgggaaaagggcgatacgatc  >  1:322131‑M1/1‑1 (MQ=255)                                                                                                                                           cGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGTAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGAAGCTTATCCGACCGCGCACCTCCAGGCTGACCAGACGCATAAacaag  >  2:127731/1‑141 (MQ=255)                                                                                                                                           |                                                                                                                                               TTGATCGTATCGCCCTTTTCCCAGTCTTTCGGATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAGGCTGACCAGAAGCATAAACACG  >  NC_000913/2879243‑2879523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.