New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	285319 =	10 (0.480)	3 (0.160)	3/244	NT	18.6%	intergenic (+151/‑76)	yagF/yagG	CP4‑6 prophage; D‑xylonate dehydratase/putative D‑xylonate transporter YagG
	?	NC_000913	285411 =	17 (0.890)					coding (17/1383 nt)	yagG	putative D‑xylonate transporter YagG

AGACGAAGCCGCAGGCGGTGTCTCCCAGCCCGTAGCCAATTTTGTCTTTCATGGTTAATTGCGTCATCAGAATTACACCCTTATGTAGTGTGCCGAATTACAACATCGTGTTAATGGAGTGTAATGAGCTATTCAATTAACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/285461‑285319 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caattaaccaTGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTATTTCTACACCGACGTCTTCGGCCTGTCGGCGGGGATTATGGGCACGCTGTTTTTGGTCTC  >  NC_000913/285411‑285549                                                                                                                                                                                                                                                                                            AGACGAAGCCGCAGGCGGTGTCTCCCAGCCCGTAGCCAATTTTGTCTTTCATGGTTAATTGCGTCATCAGAATTACACCCTTATGTAGTGTGCCGAATTACAACATCGTGTTAATGGAGTGTAATGAGCTATTCAATTAACCA                                                                                                                                             <  1:31856/143‑1                CGGTGTCTCCCAGCCCGTAGCCAATTTTGTCTTTCATGGTTAATTGCGTCATCAGAATTACACCCTTATGTAGTGTGCCGAATTACAACATCGTGTTAATGGAGTGTAATGAGCTATTCAATTAACCATGAAAGACAAAATTG                                                                                                                              <  2:167090/143‑1                                               TTTCATGGTTAATTGCGTCATCAGAATTACACCCTTATGTAGTGTGCCGAATTACAACATCGTGTTAATGGAGTGTAATGAGCTATTCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTT                                                                                               >  2:115709/1‑143                                                                                   ATGTAGTGTGCCGAATTACAACATCGTGTTAATGGAGTGTAATGAGCTATTCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTATTT                                                           <  1:115709/143‑1                                                                                                                                           AACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTATTTCTACACCGACGTCTTCGGCCTGTCGGCGGGGATTATGGGCACGCTGTTTTCGGCCT   >  2:212000/1‑143                                                                                                                                           AACCATGAAAGACAAAATTGGCGACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTATTTCTACACCGACGTCTTCGGCCTGTCGGCGGGGATTATGGGCACGCTGTTTTTGGTCT   <  2:11048/143‑1                                                                                                                                            ACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTATTTCTACACCGACGTCTTCGGCCTCTCGGCGCCGCCTACGCGCACGCTCGTTTTGGTCTC  >  2:139975/1‑143                                                                                                                                                                                                                                                                                            AGACGAAGCCGCAGGCGGTGTCTCCCAGCCCGTAGCCAATTTTGTCTTTCATGGTTAATTGCGTCATCAGAATTACACCCTTATGTAGTGTGCCGAATTACAACATCGTGTTAATGGAGTGTAATGAGCTATTCAATTAACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/285461‑285319 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caattaaccaTGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTATTTCTACACCGACGTCTTCGGCCTGTCGGCGGGGATTATGGGCACGCTGTTTTTGGTCTC  >  NC_000913/285411‑285549

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.