New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	285319 =	10 (0.480)	3 (0.160)	3/244	NT	18.6%	intergenic (+151/‑76)	yagF/yagG	CP4‑6 prophage; D‑xylonate dehydratase/putative D‑xylonate transporter YagG
	?	NC_000913	285411 =	17 (0.890)					coding (17/1383 nt)	yagG	putative D‑xylonate transporter YagG

GATAAAACCGTCTGCGGAATATTTCCCGCAGACGGCTTTGTTGTTTTTGAAATTTATTAATTTAAACAATTAGTTGAGATATATCGTTGGCGTCACAAAAGCAAAATAACGTAATTCGGAAATAAGATATGACCATTGCTGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCT  >  NC_000913/285180‑285461                                                                                                                                            |                                                                                                                                               gagaccaaaacgagcgtgcgcgtaggcggcgccgagaggccgaagacgtcggtgtagaaataggccagcaggaacatcgtggcctgccagacgaagccgcaggcggtgtctcccagcccgtagccaattttgtctttcaTGGt                                                                                                                                             >  2:139975‑M1/140‑143 (MQ=255)  aggccgaaaacagcgtgcccataatccccgccgacaggccgaagacgtcggtgtagaaataggccagcaggaacatcgtggcctgccagacgaagccgcaggcggtgtctcccagcccgtagccaattttgtctttcaTGGtt                                                                                                                                            >  2:212000‑M1/139‑143 (MQ=255)  agaccaaaaacagcgtgcccataatccccgccgacaggccgaagacgtcggtgtagaaataggccagcaggaacatcgtggcctgccagacgaagccgcaggcggtgtctcccagcccgtcgccaattttgtctttcaTGGtt                                                                                                                                            <  2:11048‑M1/5‑1 (MQ=255)                 gAATATTTCCCGCAGACGGCTTTGTTGTTTTTGAAATTTATTAATTTAAACAATTAGTTGAGATATATCGTTGGCGTCACAAAAGCAAAATAACGTAATTCGGCAAGAAGATATGACCATTGCTGGTTAATTGAATAGCTCAt                                                                                                                             >  1:73021/1‑143 (MQ=255)                            gCAGACGGCTTTGTTGTTTTTGAAATTTATTAATTTAAACAATTAGTTGAGATATATCGTTGGCGTCACAAAAGCAAAATAACGTAATTCGGAAATAAGATATGACCATTGCTGGTTAATTGAATAGCTCATTACACTCCAtt                                                                                                                  <  2:164860/143‑1 (MQ=255)                                     tttGTTGTGTTGGAAACTTATTAATTTAAACCATGAGTCGAGATATATCCTTGGCGTCACAAAAGCAAAATAACGTAATGCGGAAACACTATACCCCCATTGCGCGTTAATTGAATAGCTCATTACACTCCATTAACACGAtg                                                                                                         <  2:64993/143‑1 (MQ=255)                                     ttggttgttgttGAAATTTATTAATTTAAACAATTAGTTGAGATATATCCTTTGCGTCACAAAAGCAAAATAGCGTAATTCGGCACTAAGATATGCCCATTGCTGGTTAATTGAATAGCTCATTACACTCCATTAACACGAtg                                                                                                         <  2:64951/140‑1 (MQ=255)                                           gttTTTGAAATTTATTAATTTAAACAATTAGTTGAGATAGATAGTTGGCGTCACAAAAGCAAAATAACGTAAGTCGGAAATAAGATATGACCATTGCTGGGTAATTGAATAACTCATGAAACTCCAGTGAGACGATGTTGGaa                                                                                                   >  1:63122/1‑143 (MQ=255)                                                          aaataggccagcaggaacatcgtggcctgccagacgaagccgcaggcggtgtctcccagcccgtagccaattttgtctttcaTGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACAt                                                                                    <  1:115709‑M1/61‑1 (MQ=255)                                                                                  tagtgTTGGCGTCACAAAAGCAAAATAAAGTAATTCGGAAATAAGATATGACCATTGCTGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCaa                                                            <  2:36148/139‑1 (MQ=255)                                                                                              aagccgcaggcggtgtctcccagcccgtagccaattttgtctttcaTGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGaaa                                                >  2:115709‑M1/47‑143 (MQ=255)                                                                                               acaAAAGCAAAATAACGTAATTCGGAAATAAGATATGACCATTGCTGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTCACCATGAAAg                                               >  2:193576/1‑143 (MQ=255)                                                                                                             aCGTAATTCGGAAATAAGATATGACCATTGCTGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTAc                                 >  1:381884/1‑143 (MQ=255)                                                                                                                    tCGGAAATAAGATATGACCATTGCTGGTTAATTGAATAGCTCATTACACTCCATTAACACGAGGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTgg                          >  1:149764/1‑143 (MQ=255)                                                                                                                             caattttgtctttcaTGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCg                 <  2:167090‑M1/128‑1 (MQ=255)                                                                                                                                   tctcATTGCGGATTCAATGAAAAGCTGATTTTTTTCCTTTATCACGACGTTGTAATTCAGCACGTTACATAAACGTCTAATCTTGATTACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTAGGAGACACCGCCTGCg           <  2:63122/140‑1 (MQ=255)                                                                                                                                        ttGCTGCTTAATTGAATTGCTCATTACTCTTCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTc      <  2:15724/143‑1 (MQ=255)                                                                                                                                            TGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCt  <  1:31856‑M1/143‑1 (MQ=255)                                                                                                                                            |                                                                                                                                               GATAAAACCGTCTGCGGAATATTTCCCGCAGACGGCTTTGTTGTTTTTGAAATTTATTAATTTAAACAATTAGTTGAGATATATCGTTGGCGTCACAAAAGCAAAATAACGTAATTCGGAAATAAGATATGACCATTGCTGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCT  >  NC_000913/285180‑285461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.