New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	285319 =	10 (0.480)	3 (0.160)	3/244	NT	18.6%	intergenic (+151/‑76)	yagF/yagG	CP4‑6 prophage; D‑xylonate dehydratase/putative D‑xylonate transporter YagG
	?	NC_000913	285411 =	17 (0.890)					coding (17/1383 nt)	yagG	putative D‑xylonate transporter YagG

CACAAAAGCAAAATAACGTAATTCGGAAATAAGATATGACCATTGCTGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTATTTCTACACCGACGTCTTCGGCCTGTCGGCGGGGATTATGGGCACGCTGTTTTTGGTCTCCCGC  >  NC_000913/285273‑285553                                                                                                                                           |                                                                                                                                               aagccgcaggcggtgtctcccagcccgtagccaattttgtctttcaTGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGaaa                                                                                                                                            >  2:115709‑M1/47‑143 (MQ=255)  acaAAAGCAAAATAACGTAATTCGGAAATAAGATATGACCATTGCTGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTCACCATGAAAg                                                                                                                                           >  2:193576/1‑143 (MQ=255)           cggtgtctcccagcccgtagccaattttgtctttcatggttaattgcgtcatcagaattacacccttatgtagtgtgccgaattacaacatcgtgttaatggagtgtaatgagctattcaattaaccaTGAAAGACAAAATTg                                                                                                                                  <  2:167090‑M2/15‑1 (MQ=255)                aCGTAATTCGGAAATAAGATATGACCATTGCTGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTAc                                                                                                                             >  1:381884/1‑143 (MQ=255)                       tCGGAAATAAGATATGACCATTGCTGGTTAATTGAATAGCTCATTACACTCCATTAACACGAGGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTgg                                                                                                                      >  1:149764/1‑143 (MQ=255)                                caattttgtctttcaTGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCg                                                                                                             <  2:167090‑M1/128‑1 (MQ=255)                                      tctcATTGCGGATTCAATGAAAAGCTGATTTTTTTCCTTTATCACGACGTTGTAATTCAGCACGTTACATAAACGTCTAATCTTGATTACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTAGGAGACACCGCCTGCg                                                                                                       <  2:63122/140‑1 (MQ=255)                                          tttcatggttaattgcgtcatcagaattacacccttatgtagtgtgccgaattacaacatcgtgttaatggagtgtaatgagctattcaattaaccaTGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCtt                                                                                                   >  2:115709‑M2/98‑143 (MQ=255)                                           ttGCTGCTTAATTGAATTGCTCATTACTCTTCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTc                                                                                                  <  2:15724/143‑1 (MQ=255)                                               TGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCt                                                                                              <  1:31856‑M1/143‑1 (MQ=255)                                                                      acTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCCCGCTGTTCctgcgc                                                                       >  2:336443/1‑141 (MQ=255)                                                                      acTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGCCTGGCAGGCCACGATGTTCctgctg                                                                       >  1:267017/1‑143 (MQ=255)                                                                        tCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGc                                                                     >  2:361825/1‑143 (MQ=255)                                                                              atgtagtgtgccgaattacaacatcgtgttaatggagtgtaatgagctattcaattaaccaTGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTAttt                                                               <  1:115709‑M2/82‑1 (MQ=255)                                                                              accacGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTAttt                                                               <  2:158034/141‑1 (MQ=255)                                                                                   gATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTATTTCTaca                                                          <  1:167090/143‑1 (MQ=255)                                                                                                       tACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTATTTCTACACCGACGTCTTCGGCCTGTcg                                      >  1:161635/1‑143 (MQ=255)                                                                                                          aTAAGGGTGTAATTCTGATGTCACAATTAATCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCCGGCCTATTTCTACACCGACGTCTTCGGCCTGTcggcg                                   >  2:241675/1‑143 (MQ=255)                                                                                                              gggTGTAATTCTGATGACGCCATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTATTTCTACACCGACGTCTTCGGCCTGTCGGCGGGGa                               <  2:381884/143‑1 (MQ=255)                                                                                                                 tgtAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTATTTCTACACCGACGTCTTCGGCCTGTCGGCGGGGATTa                            <  1:361825/143‑1 (MQ=255)                                                                                                                      ttCTCATGCCACAATTATATATGAACTACAAACTCGGCTACGGGCTGGGAGACACTGCCTGCGGCTTCGTCTGGCAGGCCACGTTGTTCCTGCTTGCCTATTTCTACACCGACGTCTTCTGCCTGTCGGCGGGGATTATGGGc                       <  2:106237/143‑1 (MQ=255)                                                                                                                       tCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGATTCGTCTGGCAGGCCACGATGTTCATGCTGGCCTATTTCTACACCGACGTCTTCGGCCTGTCGGCGGGGCTTCTGGGCa                      >  2:388442/1‑143 (MQ=255)                                                                                                                           atgaCGCAATGAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTATTTCTACGCCGACGTCTTCGGCCTGTCGGCGGGGATTATGGGCACGCt                  <  2:1294/143‑1 (MQ=255)                                                                                                                                      aaccaTGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTATTTCTACACCGACGTCTTCGGCCTGTCGGCGGGGATTATGGGCACGCTGTTTTCGGcct       >  2:212000‑M2/6‑143 (MQ=255)                                                                                                                                      aaccaTGAAAGACAAAATTGGCGACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTATTTCTACACCGACGTCTTCGGCCTGTCGGCGGGGATTATGGGCACGCTGTTTTTGGtct       <  2:11048‑M2/138‑1 (MQ=255)                                                                                                                                       accaTGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTATTTCTACACCGACGTCTTCGGCCTCTCGGCGCCGCCTACGCGCACGCTCGTTTTGGtctc      >  2:139975‑M2/5‑143 (MQ=255)                                                                                                                                           tGAAAGACGCAATTGGCTGCGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTATTTCTCCCCCGACGTCTTCGGCCTGTCGGCGGGGATTCTGGGCCCGCTGTTTTTGGTCTCCcgc  <  2:305587/143‑1 (MQ=255)                                                                                                                                           |                                                                                                                                               CACAAAAGCAAAATAACGTAATTCGGAAATAAGATATGACCATTGCTGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGCAATTAACCATGAAAGACAAAATTGGCTACGGGCTGGGAGACACCGCCTGCGGCTTCGTCTGGCAGGCCACGATGTTCCTGCTGGCCTATTTCTACACCGACGTCTTCGGCCTGTCGGCGGGGATTATGGGCACGCTGTTTTTGGTCTCCCGC  >  NC_000913/285273‑285553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.