| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572471 | 32 (0.860) | 8 (0.290) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA |
6/196 | NT | 30.2% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 18 (0.480) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
AACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/572330‑572471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCC < NC_000913/2170235‑2170199 |||||||||||||||||||||||||||||||||| accacCTCAGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCGTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACT < 2:29024/138‑1 ccacCTCCGGTGACTTCTGCGCTAAACGCGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGCTGCAGAAACGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTG < 1:310266/139‑1 cacCTCCGGTGTATTCTGCACTAGACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGA < 1:513803/140‑1 atcttCGGTGACTTCTGCGCTAAACGGTGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGAT < 1:575870/138‑1 agctgCGGTGACTTCTGCGCTGAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGAT < 1:712003/138‑1 agctgCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAACCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGAT < 1:703836/138‑1 acgCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATC < 1:132280/140‑1 gggGACTTCTGCGCGAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATGCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACC < 1:73784/140‑1 ggaGACTTATGCGCTCACCGGTGACGTTTATGCGCACAGACCATCCATCCTCTCTTCTCCCTTCACAGATGCATAAATGCACCTGCAATTCTTTGCATCTAGCGTTTTACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACC < 2:315852/140‑1 ttgtCTTCTGCGCTAAACGGGGACGCTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACCGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCC < 1:688765/139‑1 gtcACTTCTTCGCTAAACGGGGACGTTTATGCGCACATACAATCCAATCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGACGCGAATCGTTAACTGATCTTACCC < 2:465788/140‑1 tggCTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAACCTCTCTTCCCCCTCCTCTCATTCTGAAATGCACCTGCAATTCTTTGCATCTAGCATTTGACCTCTGTGGTGTGGAAGCGTGAACTGATCTTACCCA < 2:227078/140‑1 gagTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAGTCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAG < 2:15545/140‑1 acgTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGC < 1:370854/140‑1 gctCTATACGTGGACGTTTATGCGCACATACAATCCATTCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGT < 2:255915/140‑1 gctCTAAACGGGGGCGATTACGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGT < 1:149174/140‑1 cgcgagACGGGGAGGTGGATGCGCACAGACAACCCAAACTCCCGTCTGCCTTCACAGATGCAGAAATGCACCTGCAAGTCTTTGCATCTAGCGGTTGACCCCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTG < 1:697993/137‑1 ctgAACGGGGACGTTTATGCGCACATACATTCCAATCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGA < 2:515390/140‑1 cgtGGACGTGTATGCGTACATTCTATCCACTCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGC < 2:274558/140‑1 cggTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCCGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAA < 2:736966/140‑1 ttgATGCGCACATACAATCCAAACTCTCTTCGCCCTTCACAGAGGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT < 1:270683/140‑1 ttcATGCGCACATACAATCCAAAGTCTCTTCGCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT < 1:333912/140‑1 tctacGCGCACATACAACCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT < 1:298150/138‑1 tatactCACATACTATTCAATCTCTCTTCTCCCTTCTTAGATGCAGAAATGCACCTGCAATGCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGA < 1:677942/137‑1 tagGCGCACCTACAATCCAAACTCTCTTCTCCCTTCACAGAGGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGA < 2:735974/140‑1 tagGCGCACATACAATCCAAACTCGCGTCGCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGA < 1:182474/140‑1 taaGCGCACACACAAACCAAACCCTCTCCCCCCTTCACCCACGCAGAACTGCACCTGCACTTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGA < 1:146494/140‑1 ggacgTACGATCCAACCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCGTTGCATCCAGCGTTGTACGTCTGCGGAGGGGAACCGTGAACTGATCTTACCCAGCAATAGTGGACATGCGGCTAAGTGAGTCAa < 2:737616/138‑2 GCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTCCCCAGCACTAGTGGACACGCGGCTAAGTatgtaaa > 1:123132/1‑136 GCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACCCGCGGCTACGCGAGTCAa > 1:703165/1‑142 tTCTTCTCCCTTCACAGATGCAGAAATGCACCTTCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTAC < 1:754187/142‑1 TTCTCCCTGCACAGATGCAGAAATGCAGCTGCAATTCTTTGCATCTAGCGTTTGACGTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCA < 2:345071/143‑1 tCCTTCACAGATGCAGAAAGGCACCTGCAATTCTTTGGAGGTAGGGTTTGACCTCTGGGGAGGGGAAGCGTGAACTGTTCTTACCTTGGAGTAGTGGACACGCGGCTGAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTA < 1:753647/142‑1 CCCTCCACAGGTGGAAAAAGGCACCGGCAACTCTCTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTA < 1:407776/143‑1 CCTTCACCGATGCAGCAATGCACCTGGAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG < 2:381655/143‑1 TTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCC < 1:241131/143‑1 |||||||||||||||||||||||||||||||||| AACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/572330‑572471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCC < NC_000913/2170235‑2170199 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |