BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 572471	32 (0.860)	8 (0.290) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA	6/196	NT	30.2%	coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein
*	?	NC_000913	= 2170235	18 (0.480)	8 (0.290) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA	6/196	NT	30.2%	noncoding (65/1258 nt)	IS3	repeat region

Only 100 of 2064 total aligned reads displayed.

GAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAACCGTGGCGTGAGAAACGCAGTCTTTCCCAGAATGC  >  NC_000913/572329‑572611

   caaaTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtga                                                                                                                                           >  1:450545‑M2/1‑140 (MQ=255)

    aacTCCGGTCACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgat                                                                                                                                          >  2:550623‑M2/1‑139 (MQ=255)

    aacGCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgat                                                                                                                                          >  1:151735‑M2/1‑139 (MQ=255)

      ctcttttgacttcTTCTCTAAACAGAGACGTTTATTCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatct                                                                                                                                        >  1:75978‑M2/7‑137 (MQ=255)

       tCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatctt                                                                                                                                       <  1:593369‑M2/143‑8 (MQ=255)

        ccGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtaatctta                                                                                                                                      <  1:668664‑M2/143‑9 (MQ=255)

        ccGGTCACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTGTTCTCCCTTCACAGAGGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatctta                                                                                                                                      >  1:687764‑M2/1‑135 (MQ=255)

          ggTGACTTCTGCGCTAAACTGGGACGACTATGCGAACAGACAATCCAAACACTCTACCCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacc                                                                                                                                    >  1:9155‑M2/1‑133 (MQ=255)

          ggTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacc                                                                                                                                    >  1:545335‑M2/1‑133 (MQ=255)

           gTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttaccc                                                                                                                                   >  1:461410‑M2/1‑132 (MQ=255)

             ggcttCTGCGCTAAACGGGGACGTTTATGCGCACATGCAATCCAAGCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccag                                                                                                                                 >  2:518709‑M2/3‑130 (MQ=255)

             gACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccag                                                                                                                                 >  1:200984‑M2/1‑130 (MQ=255)

              tctTCTGCGCTCAACGTGGACGTTTATGCGCACATACAATCCAAACTCTCTGCTCCCTACGCAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCCTTTGACCTCTGCTGAGGGGAAGCGTGAACtgatcttacccagc                                                                                                                                >  2:86561‑M2/2‑129 (MQ=255)

              aCTTCTGCGCTAAACGGGGAGGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagc                                                                                                                                >  1:273338‑M2/1‑129 (MQ=255)

              aCTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCGAACTCTCTTCTCCCTTCACCGATGCAGTCATGCACCTGCAATTCTTTGCCTCTAGCGATTGACCTCGGGGGAGGTGAAGCGGGCACtaaacttacccaga                                                                                                                                <  2:686601‑M2/143‑15 (MQ=255)

              aCTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTTAACtgatcttacccagc                                                                                                                                <  2:41399‑M2/143‑15 (MQ=255)

              aCTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagc                                                                                                                                >  2:488270‑M2/1‑129 (MQ=255)

               cttcttCGCTTAACGAGGACGTTTATGCGCACATACAATCCAAACTCTTTTCTCCCTTCATAGATGCAAAAATGCACCAGCAATTCTTTGCAACTAGCGTTGGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagca                                                                                                                               >  1:188951‑M2/1‑128 (MQ=255)

                    gcgcTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagt                                                                                                                          >  1:213570‑M2/1‑123 (MQ=255)

                    gcgcCAAGCGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagt                                                                                                                          >  2:105516‑M2/1‑123 (MQ=255)

                     cgcgagacggggaGGTGGATGCGCACAGACAACCCAAACTCCCGTCTGCCTTCACAGATGCAGAAATGCACCTGCAAGTCTTTGCATCTAGCGGTTGACCCCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtg                                                                                                                         <  1:697993‑M1/137‑22 (MQ=255)

                      gcTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtgg                                                                                                                        <  1:440254‑M2/143‑23 (MQ=255)

                       cTAAGCGGGAACGTTTATGCGCACATCCAAACCAACCGCTCTGCTCACTTCACAGATGCAGAAATGCACCTGCAATTCTGTTCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTTAACtgatcttacccagcaatagtgga                                                                                                                       >  2:154644‑M2/1‑120 (MQ=255)

                       cTAAACGGGGACGGTTATGCGCACATACTATCCAATCTCTCTTCTCCCTTCGCAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtgga                                                                                                                       >  2:312782‑M2/1‑120 (MQ=255)

                        tAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCCATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggac                                                                                                                      <  1:225143‑M2/143‑25 (MQ=255)

                        tAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATACACCTGCAATTCTTTGCATCTACCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcagtagtggcc                                                                                                                      <  2:228242‑M2/143‑25 (MQ=255)

                          aaCGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATGCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggcgac                                                                                                                    <  2:202642‑M2/143‑27 (MQ=255)

                            cGGGGACGTTTATGCGCACATACGATCCAAGCTCGCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggccacgc                                                                                                                  >  2:638224‑M2/1‑115 (MQ=255)

                            cGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTATGAGGAGGTGTAGCTTGAACtgatcttacccagcatttgtggacacgc                                                                                                                  <  1:639120‑M2/143‑29 (MQ=255)

                            cGGGGAAGTTTATGCGCACATACAATCCAAACTCTCATCTCCCTGCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgc                                                                                                                  >  1:534363‑M2/1‑115 (MQ=255)

                                  cgtggaggcgcacatacaATCCAAACGCTCTTCTCGCGTCACAGACGCAGGAATGCGCCTGCAGTTCTTGGCATCTAGCGTTTGAACTCTGCGGAGGGGAAGCGTGAACggatcttacccagcaatagtggacacgcggctaa                                                                                                            >  1:604335‑M2/8‑109 (MQ=255)

                                   gTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgaacttacccagcaaaagtggacacgcggcaaag                                                                                                           <  2:259077‑M2/143‑36 (MQ=255)

                                    tttATGCGCACATACAAGCCAAACTCTCTCCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagt                                                                                                          >  1:567470‑M2/1‑107 (MQ=255)

                                    tctatGTGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATATAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagt                                                                                                          >  1:61171‑M2/3‑107 (MQ=255)

                                             acaTACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaact                                                                                                 >  1:432518‑M2/1‑98 (MQ=255)

                                               aTACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGGATCTAGCGTTTGACCTCTGCGGAGGGGAAGCATGAACtgatcttacccagcaatagaggaaacgcggctaagtgagaaaagtat                                                                                               <  1:12513‑M2/143‑48 (MQ=255)

                                                tACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGAGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagaaaactcgc                                                                                              <  2:624304‑M2/143‑49 (MQ=255)

                                                 cgaatgCAGACTCTCTTCTCCCTTGACGGGTGCAGAAATGGACCTGAAATTCTTTGGATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca                                                                                             >  2:241402‑M2/3‑94 (MQ=255)

                                                 aCAATCCGAGCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca                                                                                             >  2:656513‑M2/1‑94 (MQ=255)

                                                     tCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTCTACATCTAGCGTTTGACCTCTGCGCAGGGGAAGCGTGAACtgatcttacccaccaatagtcgacacgcggctaagtgagccaactcgcacaca                                                                                         <  2:303947‑M2/143‑54 (MQ=255)

                                                       cAAACTCTCTTCGCCCTGCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcaga                                                                                       >  1:303701‑M2/1‑88 (MQ=255)

                                                         aaGTCGCTTGTCGCGTCACAGATGCAGAAATGCGCCTGCAGTTCTTTGCACCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagagg                                                                                     >  2:137305‑M2/1‑86 (MQ=255)

                                                            tctctTTTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtga                                                                                  >  1:375475‑M2/1‑83 (MQ=255)

                                                              tcttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAAGTACATGGCGGGAACTTCACCGCACTCGGGGGGGAGATcga                                                                                >  2:445993/1‑141 (MQ=255)

                                                               cttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGCCGGCTTCCTATTACTTGGTGGGTGGTCCACCGCTCTCGGTCGGCAGATCCAg                                                                               >  1:475853/1‑143 (MQ=255)

                                                                ttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATGGCGGCGACTTCACCGCTATCGGTCGGCAGATCCAGc                                                                              >  1:314315/1‑143 (MQ=255)

                                                                tgcccccTTCACGGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGCCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGc                                                                              <  2:608705/139‑1 (MQ=255)

                                                                  ctcCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCGTCTGGGGTTTGACCTCCGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcaca                                                                            >  1:347840‑M2/1‑77 (MQ=255)

                                                                  ctcCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGCGGGGAAGCGTGAACagatcttacacagcaatagtggaaacgcggctaagtgggtaaacgatcagtacaaggtgacacaca                                                                            <  2:360864‑M2/143‑67 (MQ=255)

                                                                  ctcCCTTCACAGATGCAGAAATGCACCTGCAATTCCTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGGGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcaca                                                                            >  2:57837‑M2/1‑77 (MQ=255)

                                                                      cTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGCGGGGAAGCGTCAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgacgcacatgcc                                                                        <  2:388997‑M2/143‑71 (MQ=255)

                                                                      cTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaggtgagtaaactctcagtcagaggtggctcacatgtc                                                                        <  1:405969‑M2/143‑71 (MQ=255)

                                                                      cTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaagtctcagtcaaaggtgactcacatgac                                                                        <  1:165092‑M2/143‑71 (MQ=255)

                                                                      cTTCACAGATGCAGAAATACACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggccacgcggctaagtgagtaaactctcagtcagaggtgactcacatgac                                                                        >  1:735632‑M2/1‑73 (MQ=255)

                                                                       ggcgcagatgCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgaca                                                                       >  1:115742‑M2/5‑72 (MQ=255)

                                                                        tCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtgaactctcagtccgaggtgactcacatgacaa                                                                      <  1:50844‑M2/143‑73 (MQ=255)

                                                                          tcagATGCACAAATGCCCTTGCAATTTTTTGCATCTAGCGTTTGACCTCTGCGGATGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagttaactctcagtcagaggtgactcacatgacaaaa                                                                    >  2:56377‑M2/2‑69 (MQ=255)

                                                                          acaGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTgga                                                                    <  1:747260/143‑1 (MQ=255)

                                                                           caGACGCAGAAAAGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTggag                                                                   <  1:419389/143‑1 (MQ=255)

                                                                             gATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaaca                                                                 >  1:390347‑M2/1‑66 (MQ=255)

                                                                              aTGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacgcagcaatagtggacacgcggctaagtgagtaacctctccatcggaggtgacccacatgacaaagaccg                                                                <  2:344528‑M2/143‑79 (MQ=255)

                                                                                  aGAAATGCACCTGCAATTCTTTGCATCTCGCGTTTGACCTCTGCGGAGGGGAAACAAGAAAaaaacttacccagcaaaagtgaacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatc                                                            <  1:678873‑M2/143‑83 (MQ=255)

                                                                                    aaaTGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaa                                                          >  1:291283‑M2/1‑59 (MQ=255)

                                                                                      aTGCACCTGCAATTCTTTGCATCTAGCGTTTAACCTCTGCGGAGGGGAAGCTGGAACtgatcttaccccgcaatagtggacacgcggctaagtgagtaaactctcagtgagaggcgactgacaggacaacaacagcatccacc                                                        <  2:471318‑M2/143‑87 (MQ=255)

                                                                                       tGCACCTGCAATTCTTTGCATCTAGCGGTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaacca                                                       >  2:71743‑M2/1‑56 (MQ=255)

                                                                                          aCCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaaaagtatcaaccagta                                                    <  2:181903‑M2/143‑91 (MQ=255)

                                                                                          aCCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggataagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagta                                                    <  2:373802‑M2/143‑91 (MQ=255)

                                                                                            cttcgattcttTGCATCTAGGGTTTGGCCGCTGCGGAGGGGAAGCGTGGACtgaacttacccagcaatagtggagacgcggctaagtgagtaaactctcagtcagaggtgactcacctgacaaaaacagtatcaaccagtaaa                                                  >  2:733525‑M2/6‑51 (MQ=255)

                                                                                             ttgaattcTTTGCATCTAGTGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccatcaatatttgacacgagaataatttagtaaactctcattcagaggtgactcacatgacaaaaacagtatcaaccagtaaaa                                                 >  2:503591‑M2/4‑50 (MQ=255)

                                                                                              gCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGCGGGGAAGCGTGACCtgatcttcccccgcaatagtagacacgcgcctaaataaataaactctcagtcagaggtgactcacatgacaaacacagtatcaaccagtaaaaa                                                <  1:248831‑M2/143‑95 (MQ=255)

                                                                                                   tCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcctacccagcaatagtggagatgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaacccc                                           >  2:275083‑M2/1‑44 (MQ=255)

                                                                                                    ctgggaatctggcGTTGGAGCTGTGCGGAGGGGAAGCGTGAACtgatcttacccaggaataggggacacgcggctaagtgagtaaacacacaggcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccg                                          >  2:533745‑M2/7‑43 (MQ=255)

                                                                                                      ttGCATCTAGCGTTTGAGCTCTGCGGAGGGAAAGCGTAAACtgagcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagagatgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgta                                        >  2:323348‑M2/1‑41 (MQ=255)

                                                                                                      ttGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggccacgtgagttgtctcgcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaacaccgta                                        <  1:559558‑M2/143‑103 (MQ=255)

                                                                                                       tGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaa                                       >  2:432372‑M2/1‑40 (MQ=255)

                                                                                                        gCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaa                                      <  2:40433‑M2/143‑105 (MQ=255)

                                                                                                           tCTAGCGTTTGGCCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacag                                   >  2:701478‑M2/1‑36 (MQ=255)

                                                                                                           tCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaacccgtagcaaaccccgtaaacag                                   <  1:655254‑M2/143‑108 (MQ=255)

                                                                                                              aGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaaaagtataaaccagtaaaaaaacacgtaaaaaacaa                                <  1:78740‑M2/143‑111 (MQ=255)

                                                                                                                  tttGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgc                            <  1:712039‑M2/143‑115 (MQ=255)

                                                                                                                    tGACCTCTGGGGAGGGGAAGCGTGAAGtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcct                          >  2:75232‑M2/1‑27 (MQ=255)

                                                                                                                    tGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccctagacagcattcgcct                          <  1:100058‑M2/143‑117 (MQ=255)

                                                                                                                       ccTCTGCTGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaa                       >  1:629422‑M2/1‑24 (MQ=255)

                                                                                                                         tctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtccgaggtgactcacatgacaaaaacagtattaaccactaaaaaaccccgtaaacagcaatcaccagaata                     <  1:138049‑M2/143‑122 (MQ=255)

                                                                                                                         tctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatt                     <  1:581467‑M2/143‑122 (MQ=255)

                                                                                                                           tGGGGAGGAGCAGCGGGAACggatcataaccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttc                   >  2:120418‑M2/1‑20 (MQ=255)

                                                                                                                            ggggagGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcg                  >  1:723048‑M2/3‑19 (MQ=255)

                                                                                                                            gCGGAGGGGAAGCGTGAACtaagagtacccagcgatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctaaatttcg                  <  2:674414‑M2/143‑125 (MQ=255)

                                                                                                                              tgaGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgca                >  1:523018‑M2/2‑17 (MQ=255)

                                                                                                                              ggggggGAAGCGTGAGCtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccattaaaaaaccccgtaaacagcattcgcctgaatttcgca                >  2:594480‑M2/1‑17 (MQ=255)

                                                                                                                              ggattggaagctTTAACtgattttactcaaaaaaagaggacacgcggctaagtgagtaaactcacaggcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgca                >  1:240785‑M2/6‑17 (MQ=255)

                                                                                                                              ggAGTGGAATCGTTAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgca                >  1:331342‑M2/1‑17 (MQ=255)

                                                                                                                                    gAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaag          <  1:261005‑M2/143‑133 (MQ=255)

                                                                                                                                     aaGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaccagcattcgcctgaatttcgcagtgaagc         <  1:492216‑M2/143‑134 (MQ=255)

                                                                                                                                      aGCGTGAACtgatctttcccaacaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaagcc        >  2:215444‑M2/1‑9 (MQ=255)

                                                                                                                                       gCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaaccctcagtaagaggtgactcacatgacaaaaacagtaacaaccaggaaaaaaccccgtaaaccgcataagcctaaaattggaagtgaaaccc       <  2:762846‑M2/143‑136 (MQ=255)

                                                                                                                                         gTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtaacaaccagtaaaaaaccccgtaaacagcattcgcctgaaattcgcagtgaagccatg     <  2:169009‑M2/143‑138 (MQ=255)

                                                                                                                                         gTCAACttatcttacccagcaataggggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaagccctg     >  1:361021‑M2/1‑6 (MQ=255)

                                                                                                                                          tGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaagccctga    <  1:174556‑M2/143‑139 (MQ=255)

                                                                                                                                            aaCtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaagccctgaag  >  2:286791‑M2/1‑3 (MQ=255)

GAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAACCGTGGCGTGAGAAACGCAGTCTTTCCCAGAATGC  >  NC_000913/572329‑572611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.