| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572471 | 32 (0.860) | 8 (0.290) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA |
6/196 | NT | 30.2% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 18 (0.480) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
ACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCT‑AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170096‑2170376 | aCCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCACTAATGGACACGCGAGT‑CATTGCGTAAACTCTCAGTCACACGAGACTCACATg > 2:122688/1‑143 (MQ=255) tatTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCCGCAATAGTGGACACGCGGCT‑AAGTGAGTAAACTCTCAGACAAAGGTGACTCACAAGACaaaaa > 1:613996/1‑143 (MQ=255) tatTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCT‑AAGTGAGAAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa > 1:673538/1‑143 (MQ=255) ttgtGGCGGTCATTAATCCTTCGGCGATAAGCTTTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCT‑AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg < 2:549391/140‑1 (MQ=255) gtGGGGGTCATGAATCCTGCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCT‑AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTa < 1:338284/142‑1 (MQ=255) gCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCT‑AAGTGAGTAAACTCTCAGTCAGAGGTGACTCCCATGACAAAAACAGTATCa > 1:481514/1‑143 (MQ=255) ggTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCGAGCAATAGTGGACACGCGGCT‑AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc > 2:547090/1‑143 (MQ=255) ggTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGAGGGCA‑GCTATTGGTTTCAGTAACCCCTCACGCAGAGGTGACTCCCATGCCCAACACAGTATCAAc > 1:765021/1‑143 (MQ=255) aTTAATCCTTCGGCGCTAAGCATTATCGTACTTCCGCTGTCGAGAACAACGGTCTGAACTAACCCGACAATAGTGGACACGCACCT‑AAGTGAGGAACCTCTCAGTCAGAGGTGAACCACATGAGGAACACAGTATCAACCAGt > 2:598304/1‑143 (MQ=255) aagccTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCT‑AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaa < 2:77989/140‑1 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCAAGCAATAGTGGACACGCGGCT‑AAGTGAGTAAACTCTCAGTCAGAGGTGAACTACATGACACAACGAGCATCAAGCACTAAAAAAccc > 1:708721/1‑143 (MQ=18) tgtcgttAAGCATTGTCGTACTTCTGCTTTCGAGAATAACTGGCTGATCTTACCCAGCGATAGTGGACACGCGGCT‑AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcccc < 1:467556/137‑1 (MQ=17) gCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACACAGCAATAGTGGACACGCGGCT‑AAGTGAGTAAACTCTCAGTCAGAGGTGAATCACATGACAAAAACAGTCTCAACCAGTAAAAACCCCCgg > 2:266257/1‑142 (MQ=255) agaaGCATTGTCGTACCTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCT‑AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa < 2:522681/141‑1 (MQ=255) cATTGTTGTACTTCCGCTGTCGAGAATAACGGTATGATCTTACACAGCAATAGTGGACACGCGGCT‑AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCa < 1:431127/143‑1 (MQ=255) tttGTCGTACTTCTGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCT‑AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAt < 1:573958/142‑1 (MQ=255) gCTGTCGCGAATTACGTTCTTATCTTACCCAGCATTAGTGGACACGCGGCT‑AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCg < 1:361142/143‑1 (MQ=11) cTGTCGAGAATAACGGTCTGATCTTACCCAGCAATCGTGGACACGCGGCT‑AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGc < 1:408081/143‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAGTAGTGGCCACGCGGCT‑ACGTGAGAAAACTCTCAGTCAGAGGTGACACACATGACAAAAGCAGTATCAACCAGGAAAAAACCCAGTAAACAGCATTCGCGTGAATTTCGCAGt > 1:750425/1‑143 (MQ=14) ggCT‑AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaa < 1:241131‑M2/143‑107 (MQ=255) cT‑AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattccaggtgcattgctgcatcggtgaagg < 2:381655‑M2/143‑109 (MQ=255) t‑AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcagagagttgccggtgcctttttccacctgtggaggg < 1:407776‑M2/143‑110 (MQ=255) t‑AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACtcagccgcgtgtccactactccaaggtaagaacagttcacgcttcccctccccagaggtcaaaccctacctccaaagaattgcaggtgcctttctgcatctgtgaagga < 1:753647‑M2/143‑110 (MQ=255) tGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagacgtcaaacgctagatgcaaagaattgcagctgcatttctgcatctgtgcagggagaa < 2:345071‑M2/143‑114 (MQ=255) gTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgaaggtgcatttctgcatctgtgaagggagaagaa < 1:754187‑M2/143‑117 (MQ=255) tttacatacttagccgcgtgtccactagtgctggggaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgc > 1:123132‑M2/8‑9 (MQ=255) ttgACTCGCgtagccgcgggtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgc > 1:703165‑M2/2‑9 (MQ=255) ttgACTCACttagccgcatgtccactattgctgggtaagatcagttcacggttcccctccgcagacgtacaacgctggatgcaacgaattgcaggtgcatttctgcatctgtgaagggagaagagaggttggatcgtacgtcc < 2:737616‑M2/142‑135 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagcattgcaggtgcatttctgcatctaagaagggagaagagagattgaatagtatgtgagtata < 1:677942‑M2/143‑140 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcctctgtgaagggagaagagagtttggattgtaggtgcgccta < 2:735974‑M2/143‑140 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggcgacgcgagtttggattgtatgtgcgccta < 1:182474‑M2/143‑140 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaagtgcaggtgcagttctgcgtgggtgaaggggggagagggtttggtttgtgtgtgcgctta < 1:146494‑M2/143‑140 (MQ=255) aCttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcctctgtgaagggcgaagagagtttggattgtatgtgcgcatcaa < 1:270683‑M2/143‑142 (MQ=255) aCttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggcgaagagactttggattgtatgtgcgcatgaa < 1:333912‑M2/143‑142 (MQ=255) aCttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttgggttgtatgtgcgcgtaga < 1:298150‑M2/143‑142 (MQ=255) | ACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCT‑AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170096‑2170376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |