mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572411 | 541 (14.460) | 8 (0.230) | 4/250 | NT | 1.9% | coding (44/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572431 | 300 (8.470) | coding (64/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | = 572325 | 1544 (41.260) | 9 (0.260) | 8/244 | NT | 0.63% | intergenic (+74/‑43) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572334 | 1435 (41.510) | intergenic (+83/‑34) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 572316 = | 1583 (42.300) | 19 (0.550) | 8/244 | NT | 1.3% | intergenic (+65/‑52) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | 572345 = | 1435 (41.510) | intergenic (+94/‑23) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | = 570701 | 1692 (45.210) | 11 (0.310) | 8/250 | NT | 0.68% | intergenic (+273/‑192) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | = 570711 | 1602 (45.220) | intergenic (+283/‑182) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 570695 = | 1667 (44.540) | 23 (0.650) | 18/250 | NT | 1.4% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 1602 (45.220) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | = 570639 | 1678 (44.840) | 3 (0.090) | 3/238 | NT | 0.20% | intergenic (+211/‑254) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | = 570663 | 1542 (45.740) | intergenic (+235/‑230) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 570627 = | 1655 (44.220) | 6 (0.180) | 4/238 | NT | 0.39% | intergenic (+199/‑266) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570677 = | 1542 (45.740) | intergenic (+249/‑216) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | = 569159 | 1875 (50.100) | 28 (0.820) | 12/242 | NT | 1.6% | coding (258/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | = 569161 | 1818 (53.030) | coding (260/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | 569149 = | 1856 (49.590) | 30 (0.880) | 15/242 | NT | 1.7% | coding (248/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | 569173 = | 1818 (53.030) | coding (272/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | = 568908 | 2168 (57.930) | 4 (0.110) | 4/250 | NT | 0.19% | coding (7/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | = 568928 | 2195 (61.960) | coding (27/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||