| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 311347 = | 56 (0.990) | 3 (0.060) | 3/248 | NT | 5.2% | intergenic (‑11/‑765) | ecpR/ykgL | DNA‑binding transcriptional dual regulator MatA/uncharacterized protein YkgL |
| ? | NC_000913 | 311366 = | 56 (1.060) | intergenic (‑30/‑746) | ecpR/ykgL | DNA‑binding transcriptional dual regulator MatA/uncharacterized protein YkgL | |||||
ATTGACACTCATCGGGAAAAAAAACATAAATTTAAGCCCAATCGAAAATAATTAAACTTAATCTCGTTTAACCTTTATTGATATGTACTACGTATCTTATTTACTTCCGGTTTACTAAGGAAACTGAATGCACCTGTAAAAATTACAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/311496‑311347‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttacaggtGCATTCAGTTTCCTTAGTAAACCGGAAGTAAATAAGATACGTAGTACATATCAATAAAGGTTAAACGAGATTAAGTTTAATTATTTTCGATTGGGCTTAAATTTATGTTTTTTTTCCCGATGAGTGTCAATATGTGAACGG > NC_000913/311366‑311506 ATTGACACTCATCGGGAAAAAAAACATAAATTTAAGCCCAATCGAAAATAATTAAACTTAATCTCGTTTAACCTTTATTGATATGTACTACGTATCTTATTTACTTCCGGTTTACTAAGGAAACTGAATGCACCTGTAAAAAT > 1:46896/1‑143ATTGACACTCATCGGGAAAAAAAACATAAATTTAAGCCCAATCGAAAATAATTAAACTTAATCTCGTTTAACCTTTATTGATATGTACTACGTATCTTATTTACTTCCGGTTTACTAAGGAAACTGAATGCACCTGTAAAAAT < 2:113809/143‑1ATTGACACTCATCGGGAAAAAAAACATAAATTTAAGCCCAATCGAAAATAATTAAACTTAATCTCGTTTAACCTTTATTGATATGTACTACGTATCTTATTTACATCACGCATATTGAGTAAACTGAATGCACCTGTAAAAAT > 1:460362/1‑143 TTGACACTCATTGGGAAAAAAAACATAAATTTAAGCCCAATCGAAAATAATTAAACTTAATCTCGTTTAACCTTTATTGATATGTACTACGTATCTTATTTACTTCCGGTTTACTAAGGAAACTGAATGCACCTGTAAAAATT < 1:423680/143‑1 GACACTCATCGGGAAAAAAAACATAAATTTAAGCCCAATCGAAAATAATTAAACTTAATCTCGTTTAACCTTTATTGATATGTACTACGTATCTTATTTACTTCCGGTTTACTAAGGAAACTGAATGCACCTGTAAAAATTAC > 1:787207/1‑143 TACGTATCTTATTTACTTCCGGTTTACTAAGGAAACTGAATGCACCTGTAAAAATTACAGGTGCATTCAGTTTCCTTAGTAAACCGGAAGTAAATAAGATACGTAGTACATATCAATAAAGGTTAAACGAGATTAAGTTTAAT > 1:495357/1‑143 TAAGGAAACTGAATGCACCTGTAAAAATTACAGGTGCATTCAGTTTCCTTA > 1:304450/1‑51 TAAGGAAACTGAATGCACCTGTAAAAATTACAGGTGCATTCAGTTTCCTTA < 2:304450/51‑1 tATTACAGGTGCATTCAGTTTACTTAGTAAACCGGAAGTAAATAAGATAAGTAGTATATATCAATAAAGGTTAAACGAGATTAAGTTTAATTATTTTCGATTGGGCTTAAATTTATGTTTTTTTTCCCGATGAGTGTCAATAT < 2:126744/142‑1 CAGGTGCATTCAGTTTCCTTAGTAAACCGGAAGTAAATAAGCTACGTAGTACATAAAACAATAGTATAAACGAGATTAAGTTTAATTATTTTCGATTGGGCTTAAATTTATGTTTTTTTTCCCGATGAGTGTCAATATGTGAA < 1:411383/143‑1 AGGTGCATTCAGTTTCCTTAGTAAACCGGAAGTAAATAAGATACGTAGTACATATCAATAAAGGTTAAACGAGATTAAGTTTAATTATTTTCGATTGGGCTTAAATTTATGTTTTTTTTCCCGATGAGTGTCAATATGTagac > 2:983954/1‑139 GTGCATTCAGTTTCCTTAGTAAACCGGAAGTAAATAAGATACGTAGTACATATCAATAAAGGTTAAACGAGATTAAGTTTAATTATTTTCGATTGGGCTTAAATTTATGTTTTTTTTCCCGATGAGTGTCAATATGTGAACGG > 2:532158/1‑143 GTGCAGTCAGTTTCCTTAGTAAACCGGAAGTAAATAAGATACGTAGTACATATCAATAAAGGTTAAACGAGATTAAGTTTAATTATTTTCGATTGGGCTTAAATTTATGTTTTTTTTCCCGATGAGTGTCAATATGTGAACGG > 2:918114/1‑143 ATTGACACTCATCGGGAAAAAAAACATAAATTTAAGCCCAATCGAAAATAATTAAACTTAATCTCGTTTAACCTTTATTGATATGTACTACGTATCTTATTTACTTCCGGTTTACTAAGGAAACTGAATGCACCTGTAAAAATTACAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/311496‑311347‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttacaggtGCATTCAGTTTCCTTAGTAAACCGGAAGTAAATAAGATACGTAGTACATATCAATAAAGGTTAAACGAGATTAAGTTTAATTATTTTCGATTGGGCTTAAATTTATGTTTTTTTTCCCGATGAGTGTCAATATGTGAACGG > NC_000913/311366‑311506 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |