New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1104922 =	53 (0.940)	3 (0.060)	3/246	NT	5.7%	intergenic (+20/‑39)	csgA/csgC	curlin, major subunit/inhibitor of CsgA amyloid formation
	?	NC_000913	1104944 =	50 (0.950)					intergenic (+42/‑17)	csgA/csgC	curlin, major subunit/inhibitor of CsgA amyloid formation

AAGATTGAGTAAGAGTGACTTCAGGAATAATGGTATACACATCCCCTTGCTGGGTCGTATTAAAGGTTATCTGACTGGAAAGTGCCGCAAGGAGTAATAACGTATTCATATTCTTCTCCCGAAAAAAAACAGGGCTTGCGCCCTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1105069‑1104922 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctgtttTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCAGAGTA  >  NC_000913/1104944‑1105083                                                                                                                                                                                                                                                                                                  AAGATTGAGTAAGAATGACTTCAGGAATAATGGTATACACATCCCCTTGCTGGGTCGTATTAAAGGTTATCTGAAAAGAAGGTGCCGCAAGGAGTAATAACGTATTCATATTCTTCTCCCGAAAAACAACAGGGCTTGCGgcg                                                                                                                                                   >  2:959127/1‑140   GATTGAGTAAGAGTGACTTCAGGAATAATGGTATACACATCCCCTTGCTGGGTCGTATTAAAGGTTATCTGACTGGAAAGTGCCGCAAGGAGTAATAACGTATTCATATTCTTCTCCCGAAAAAAAACAGGGCTTGCGCCCTG                                                                                                                                                 >  2:162481/1‑143          TAAGAGTGACTTCAGGAATAATGGTATACACATCCCCTTGCTGGGTCGTATTAAAGGTTATCTGACTGGAAAGTGCCGCAAGGAGTAATAACGTATTCATGTTCTTCTCCCGAAAAAAAACAGGGCTTGCGCCCCGTTggggt                                                                                                                                          >  1:92277/1‑138                                                                                             AGTAATAGCGTATTCATATTCTTCTCCCGAAAAAAAACAGGACTTGCGCCCTGTTTTTTTTCTGGAGAAAAATATGAATACGTTATTACTCCTTGCGGCACTTTCAAGTCAGATAACCTTTAATACTACCCACCACGGGGATG                                                       >  2:548690/1‑143                                                                                              GTAATAACGTATTCATATTCTTCTCCCGAAAAAAAACAGGGCTTGCGCCCTGTTTTTTTTCGGGCGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGTCCCAGCAAGGGGATGg                                                      >  1:913118/1‑142                                                                                                                                  CAGGGCTTGCGCCCTGTTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACAACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATC                  >  1:76521/1‑143                                                                                                                                            GCCCTGTTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGC        >  1:1020158/1‑143                                                                                                                                             CCCTGTTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATCACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCA       >  1:488653/1‑143                                                                                                                                             CCCTGTTCTCTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCA       <  2:754203/143‑1                                                                                                                                              CCTGTTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGTCACTTTCCATTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACAATTATTCCTGCAGTCACTCTTACTCAATGTTGTCTGTGCAG      >  2:688591/1‑143                                                                                                                                              CCTGTTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGGCGTCACCTTTACTCCGTCTTGTCTGTGCgg      >  1:430063/1‑141                                                                                                                                              CCTGTTTTTTTTCGGGAGAAGAATATGAATACGTTAGTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCAG      >  1:717734/1‑143                                                                                                                                               CTGTTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCAGA     <  2:626365/143‑1                                                                                                                                               CTGTTGTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCAGA     <  2:944778/143‑1                                                                                                                                                TGTTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCATGAGGCACTTTCCAGTCAGATAACCTTTAATACGAACAAGTATGGGGATGCGCATCCTAGTATGCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCCGAG    >  1:984956/1‑143                                                                                                                                                  TTTTTTTTCGGGAGAAGAATATGAATACGTTATGACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTACTACGACCCAGCAAGGGGATGTGTCTACCATTATTCCTGAAGTCAGTCCTACTCAAGCTTGTCTTTGCAGACTA  >  1:1058135/1‑143                                                                                                                                                                                                                                                                                                  AAGATTGAGTAAGAGTGACTTCAGGAATAATGGTATACACATCCCCTTGCTGGGTCGTATTAAAGGTTATCTGACTGGAAAGTGCCGCAAGGAGTAATAACGTATTCATATTCTTCTCCCGAAAAAAAACAGGGCTTGCGCCCTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1105069‑1104922 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctgtttTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCAGAGTA  >  NC_000913/1104944‑1105083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.