New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1104922 =	53 (0.940)	3 (0.060)	3/246	NT	5.7%	intergenic (+20/‑39)	csgA/csgC	curlin, major subunit/inhibitor of CsgA amyloid formation
	?	NC_000913	1104944 =	50 (0.950)					intergenic (+42/‑17)	csgA/csgC	curlin, major subunit/inhibitor of CsgA amyloid formation

GCAACGGTGCTGCAGTTGACCAGACTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCAGAGTACAA  >  NC_000913/1104808‑1105086                                                                                                                                          |                                                                                                                                               gcgaCGTTGCTGCAGTTGACCAGACTGCATCTATCTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCg                                                                                                                                          <  2:131197/140‑1 (MQ=255) gCAACGGTGCTGCAGTTGACCAGGCTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCg                                                                                                                                          <  2:1034358/143‑1 (MQ=255) gCAACGGTGCTGCAGTTGACCAGACTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCg                                                                                                                                          <  1:377789/143‑1 (MQ=255)  cAACTGTGCCGCTGTTGCCCACACTGCATCTAACTCCGCCTTCAACGTCACTCAGTTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACACAAACAGGGCGCAAGCCCTG‑TTTTTTTTCgg                                                                                                                                         <  1:201279/143‑1 (MQ=255)  cAACGGTGCTGCAGTTGACCAGACTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCgg                                                                                                                                         >  1:116635/1‑143 (MQ=255)    aCGGTGCTGCAGTTGACCAGACTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGga                                                                                                                                       <  1:135186/143‑1 (MQ=255)      ggTGCTGCAGTTGACCAGACTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGgaga                                                                                                                                     <  2:417341/143‑1 (MQ=255)             cAGTTGACCAGACTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAatat                                                                                                                              >  1:56476/1‑143 (MQ=255)                    ccAGACGGCAGCTGACTCCCCCGGCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACg                                                                                                                       <  1:1038895/143‑1 (MQ=255)                       gACTGCATCTAACTCCTCCGTCAACGTGCATCCGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGAACTAAGAACTAAAGTGTGGTACACCAACACGGCTCAAGCCGTG‑TTTTTTTTGGGGTGAAGAATATGAATACGtta                                                                                                                    >  1:41620/1‑143 (MQ=255)                           ccatccccttgctgggacgtattaaaggttatctgactggaaagtgccgcaaggagtaataacgtattcatattcttcgcccgaaaaaAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTAc                                                                                                                >  1:913118‑M1/89‑143 (MQ=255)                            catccccgtggtgggtagtattaaaggttatctgacttgaaagtgccgcaaggagtaataacgtattcatatttttctccagaaaaaAAACAGGGCGCAAGTCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGCTATTACt                                                                                                               >  2:548690‑M1/88‑143 (MQ=255)                                  aCTCCTCCGTCAACTTGACTCATGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCTTTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGc                                                                                                         <  2:614616/143‑1 (MQ=255)                                  aCTCCGCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTACTACATCATTTGTATTACAGAAACAGGGCGCAAGCCCCG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGc                                                                                                         <  1:1065251/143‑1 (MQ=255)                                      ctccGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCa                                                                                                     >  2:729134/1‑143 (MQ=255)                                          gTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATCTGAATACGTTATTACTCCTTGCGGCACttt                                                                                                 >  1:219808/1‑143 (MQ=255)                                          cgcAACGTGACTCAGGTGGGCTGTGGCAACAACGCGACCGCTCACCAGTACTAATACATCATTGGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACttt                                                                                                 <  1:616926/141‑1 (MQ=255)                                           tCAACGTGACTCAGGTTTGCTTTGGTAACAACGCGACCGCTCGTATGTGCCAGTACATCATTTGTATTTCATAATCAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTc                                                                                                <  1:466274/143‑1 (MQ=255)                                            cAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTcc                                                                                               <  1:729134/143‑1 (MQ=255)                                             aaCGTGCCTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCTAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCa                                                                                              <  2:504779/143‑1 (MQ=255)                                             aaCGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCa                                                                                              >  1:278496/1‑143 (MQ=255)                                                 tGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCa                                                                                          >  1:1032528/1‑143 (MQ=255)                                                     tCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATa                                                                                      >  1:676920/1‑143 (MQ=255)                                                     tCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACCTTCCAGTCAGATa                                                                                      >  2:992081/1‑143 (MQ=255)                                                       aGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAAc                                                                                    <  1:569674/143‑1 (MQ=255)                                                             gCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGGATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTaa                                                                              <  2:9897/143‑1 (MQ=255)                                                              cTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTATTTTTAAGAAGAAGAATATGAATACGTTATTACTCCTTGCGGTACTTTCAAGTCAGATAACCTTTAAt                                                                             >  2:388009/1‑143 (MQ=255)                                                               tttGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATa                                                                            >  1:634688/1‑143 (MQ=255)                                                               tttGGTAACAACGCGACCGCTCATCAGTACTAATACATCATCTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCTCTTTCCACTCAGTTTACCTTCAATa                                                                            >  1:198516/1‑143 (MQ=255)                                                                 tGGTGACAACGCGACCGCTGGTCGGTACTAGTGCATCAGTTGGAGTACAGAAACAGGGCGCAAGCCCTG‑TGTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCGTTAATACg                                                                          <  2:453737/143‑1 (MQ=255)                                                                    tAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTCTTTCGGGAGAAGAATATGAATACGTTATTACCCCTTGCGGCACTTCCCAGCAAGATAACCTTTAATACGAcc                                                                       >  2:1044882/1‑143 (MQ=255)                                                                      acaacGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCa                                                                     >  1:324684/1‑143 (MQ=255)                                                                          cgcgACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCaa                                                                 >  1:626365/1‑143 (MQ=255)                                                                          cgcgACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCaa                                                                 <  2:116635/143‑1 (MQ=255)                                                                             gACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAggg                                                              >  1:370791/1‑143 (MQ=255)                                                                                cGCTCATCAGTACTACTACATCATTTGTATGACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCGTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGAt                                                           <  2:85738/143‑1 (MQ=255)                                                                                cGCTCATCAGTACTAATACATCATTTGTATTACAGAAACGGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGACGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGAt                                                           <  1:695710/143‑1 (MQ=255)                                                                                cGCTCATAAGTTCTGATGCATTATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTCTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGAt                                                           <  2:323357/143‑1 (MQ=255)                                                                                  agtaatagcgtattcatattcttctcccgaaaaaaaacaggacttgcgccctgtttTTTTTCTGGAGAAAAATATGAATACGTTATTACTCCTTGCGGCACTTTCAAGTCAGATAACCTTTAATACTACCCACCACGGGGAtg                                                          >  2:548690‑M2/57‑143 (MQ=255)                                                                                   tcatcaGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCACTCCGATAACCTTTAATACGACCCATCAAGGGGAtgtg                                                        >  2:277293/1‑143 (MQ=255)                                                                                   gtaataacgtattcatattcttctcccgaaaaaaaacagggcttgcgccctgtttTTTTTCGGGCGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGTCCCAGCAAGGGGatgg                                                         >  1:913118‑M2/56‑142 (MQ=255)                                                                                        aGTACTAATCCCTCATTTGGATGACAGAAACAGGATTGTTTTCCCG‑TGTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATAc                                                   <  2:1071614/143‑1 (MQ=255)                                                                                         gTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTATTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATAcc                                                  >  1:555874/1‑143 (MQ=255)                                                                                         gTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGGTATTACTCCTTGGGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATAcc                                                  >  1:903539/1‑143 (MQ=255)                                                                                             tAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCatta                                              >  2:248586/1‑143 (MQ=255)                                                                                               aTACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGTAGAAGAATATGAATCCGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCCGCACGCCCCTGTGTATAccgcactt                                            >  2:607437/1‑137 (MQ=255)                                                                                               aTACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACATTATTACTCCTTGCGGCACTTTCCAGTAAGATAACCTTTAATGCGACCCAGTAAGGGGCTGTGTATACGgttatt                                            >  2:554512/1‑143 (MQ=255)                                                                                                   atcatTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTg                                        >  1:279716/1‑143 (MQ=255)                                                                                                   atcatTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTg                                        >  2:656839/1‑143 (MQ=255)                                                                                                    tcatTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGa                                       >  2:64919/1‑143 (MQ=255)                                                                                                     cctttGTATTACAAAAACAGGGCGCAAGCCCGG‑TTTTTTGCCGGGAGAAGAAGATGACTACGTTATTACTCCTTGCGGCACTGGCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGaa                                      <  2:1082084/141‑1 (MQ=255)                                                                                                      ctttGTATTACAGAAACAGGGCGCAAGCCCTGTTTTTTTTTCGTGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGaa                                      >  1:759952/2‑143 (MQ=255)                                                                                                            aTTACAGAAACTGGGCGCTAGCCCTG‑TTTTTGTTCGGGAGAAGAATATGAATTCGTTATTACTCGTTGCGGCAGTTTCCAGTCAGATGACCTTTTACACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCActc                               <  2:894366/143‑1 (MQ=255)                                                                                                               accccAACGGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAACATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTa                            >  1:92277‑M1/6‑143 (MQ=255)                                                                                                               aCAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGACACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTa                            <  1:81561/143‑1 (MQ=255)                                                                                                                      CAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATc                     >  2:162481‑M1/1‑143 (MQ=255)                                                                                                                       cagggcttgcgccctgtttTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACAACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATc                     >  1:76521‑M2/20‑143 (MQ=255)                                                                                                                        cgcCGCAAGCCCTG‑TTGTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACCTTCTTTTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCATTCTTACTCAATCtt                   >  2:959127‑M1/4‑143 (MQ=255)                                                                                                                                 gccctgtttTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGc           >  1:1020158‑M2/10‑143 (MQ=255)                                                                                                                                  ccctgtttTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATCACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCa          >  1:488653‑M2/9‑143 (MQ=255)                                                                                                                                  ccctgttcTCTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCa          <  2:754203‑M2/135‑1 (MQ=255)                                                                                                                                   cctgtttTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGTCACTTTCCATTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACAATTATTCCTGCAGTCACTCTTACTCAATGTTGTCTGTGCag         >  2:688591‑M2/8‑143 (MQ=255)                                                                                                                                   cctgtttTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGGCGTCACCTTTACTCCGTCTTGTCTGtgcgg         >  1:430063‑M2/8‑141 (MQ=255)                                                                                                                                   cctgtttTTTTTCGGGAGAAGAATATGAATACGTTAGTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCag         >  1:717734‑M2/8‑143 (MQ=255)                                                                                                                                    ctgtttTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCaga        <  2:626365‑M2/137‑1 (MQ=255)                                                                                                                                    ctgttgTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCaga        <  2:944778‑M2/137‑1 (MQ=255)                                                                                                                                     tgtttTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCATGAGGCACTTTCCAGTCAGATAACCTTTAATACGAACAAGTATGGGGATGCGCATCCTAGTATGCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCcgag       >  1:984956‑M2/6‑143 (MQ=255)                                                                                                                                       tttTTTTTCGGGAGAAGAATATGAATACGTTATGACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTACTACGACCCAGCAAGGGGATGTGTCTACCATTATTCCTGAAGTCAGTCCTACTCAAGCTTGTCTTTGCAGACTa     >  1:1058135‑M2/4‑143 (MQ=255)                                                                                                                                          ttttgCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCAGAGTACaa  <  1:674181/143‑1 (MQ=255)                                                                                                                                          |                                                                                                                                               GCAACGGTGCTGCAGTTGACCAGACTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCAGAGTACAA  >  NC_000913/1104808‑1105086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.