| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1104922 = | 53 (0.940) | 3 (0.060) | 3/246 | NT | 5.7% | intergenic (+20/‑39) | csgA/csgC | curlin, major subunit/inhibitor of CsgA amyloid formation |
| ? | NC_000913 | 1104944 = | 50 (0.950) | intergenic (+42/‑17) | csgA/csgC | curlin, major subunit/inhibitor of CsgA amyloid formation | |||||
AATGACGGTTAAACAGTTCGGTGGTGGCAACGGTGCTGCAGTTGACCAGACTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTA > NC_000913/1104782‑1105060 | tagtctgcaaagacaagcttgagtaggactgacttcaggaataatggtagacacatccccttgctgggtcgtagtaaaggttatctgactggaaagtgccgcaaggagtcataacgtattcatattcttctcccgaaaaaaaa > 1:1058135‑M1/141‑143 (MQ=255) ctcggcacagacaagattgagtaagagtgacttcaggcatactaggatgcgcatccccatacttgttcgtattaaaggttatctgactggaaagtgcctcatggagtaataacgtattcatattcttctcccgaaaaaAAACa > 1:984956‑M1/139‑143 (MQ=255) tctgcacagacaagattgagtaagagtgacttcaggaataatggtatacacatccccttgctgggtcgtattaaaggttatctgactggaaagtgccgcaaggagtaataacgtattcatattcttctcccgaaaaaCAACAg < 2:944778‑M1/6‑1 (MQ=255) tctgcacagacaagattgagtaagagtgacttcaggaataatggtatacacatccccttgctgggtcgtattaaaggttatctgactggaaagtgccgcaaggagtaataacgtattcatattcttctcccgaaaaaAAACAg < 2:626365‑M1/6‑1 (MQ=255) ctgcacagacaagattgagtaagagtgacttcaggaataatggtatacacatccccttgctgggtcgtattaaaggttatctgactggaaagtgccgcaaggagtactaacgtattcatattcttctcccgaaaaaAAACAgg > 1:717734‑M1/137‑143 (MQ=255) ctgcacagacaacattgagtaagagtgactgcaggaataattgtatacacatccccttgctgggtcgtattaaaggttatctgaatggaaagtgacgcaaggagtaataacgtattcatattcttctcccgaaaaaAAACAgg > 2:688591‑M1/137‑143 (MQ=255) ccgcacagacaagacggagtaaaggtgacgccaggaataatggtatacacatccccttgctgggtcgtattaaaggttatctgactggaaagtgccgcaaggagtaataacgtattcatattcttctcccgaaaaaAAACAgg > 1:430063‑M1/137‑143 (MQ=255) tgcacagacaagattgagtaagagtgacttcaggaataatggtatacacatccccttgctgggtcgtattaaaggttatctgactggaaagtgccgcaaggagtaataacgtattcatattcttctcccgaaagaGAACAggg < 2:754203‑M1/8‑1 (MQ=255) tgcacagacaagattgagtaagagtgacttcaggaataatggtatacacatccccttgctgggtcgtattaaaggtgatctgactggaaagtgccgcaaggagtaataacgtattcatattcttctcccgaaaaaAAACAggg > 1:488653‑M1/136‑143 (MQ=255) cGGTTAAACAGTTCGGTGGTGGCAACGGTGCTGCAGTTGACCAGACTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAggg < 1:134480/143‑1 (MQ=255) gcacagacaagattgagtaagagtgacttcaggaataatggtatacacatccccttgctgggtcgtattaaaggttatctgactggaaagtgccgcaaggagtaataacgtattcatattcttctcccgaaaaaAAACAGGgc > 1:1020158‑M1/135‑143 (MQ=255) tAAACAGTTCGGTGGTGGCAACGGTGCTGCAGTTGACCAGACTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCa > 1:9897/1‑143 (MQ=255) gattgagtaagagtgacttcaggaataatggtatacacatccccttgctgggttgtattaaaggttatctgactggaaagtgccgcaaggagtaataacgtattcatattcttctcccgaaaaaAAACAGGGCGCAAGCCCTg > 1:76521‑M1/125‑143 (MQ=255) cGGTGGTGTCAACGGTGCGGCAGTTGACCAGACTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTGTGGTAACAACGCGACTGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑tt < 1:85164/143‑1 (MQ=255) ggtggtGGCAACGGTGCTGCAGTTGACCAGCCTGCATCTAACTCCCCCGTCAACGTGACTCAGGTTGGCTTTGGTAACACCGCTACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑ttt < 1:928566/143‑1 (MQ=255) gcgaCGTTGCTGCAGTTGACCAGACTGCATCTATCTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCg < 2:131197/140‑1 (MQ=255) gCAACGGTGCTGCAGTTGACCAGGCTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCg < 2:1034358/143‑1 (MQ=255) gCAACGGTGCTGCAGTTGACCAGACTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCg < 1:377789/143‑1 (MQ=255) cAACTGTGCCGCTGTTGCCCACACTGCATCTAACTCCGCCTTCAACGTCACTCAGTTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACACAAACAGGGCGCAAGCCCTG‑TTTTTTTTCgg < 1:201279/143‑1 (MQ=255) cAACGGTGCTGCAGTTGACCAGACTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCgg > 1:116635/1‑143 (MQ=255) aCGGTGCTGCAGTTGACCAGACTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGga < 1:135186/143‑1 (MQ=255) ggTGCTGCAGTTGACCAGACTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGgaga < 2:417341/143‑1 (MQ=255) cAGTTGACCAGACTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAatat > 1:56476/1‑143 (MQ=255) ccAGACGGCAGCTGACTCCCCCGGCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACg < 1:1038895/143‑1 (MQ=255) gACTGCATCTAACTCCTCCGTCAACGTGCATCCGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGAACTAAGAACTAAAGTGTGGTACACCAACACGGCTCAAGCCGTG‑TTTTTTTTGGGGTGAAGAATATGAATACGtta > 1:41620/1‑143 (MQ=255) ccatccccttgctgggacgtattaaaggttatctgactggaaagtgccgcaaggagtaataacgtattcatattcttcgcccgaaaaaAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTAc > 1:913118‑M1/89‑143 (MQ=255) catccccgtggtgggtagtattaaaggttatctgacttgaaagtgccgcaaggagtaataacgtattcatatttttctccagaaaaaAAACAGGGCGCAAGTCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGCTATTACt > 2:548690‑M1/88‑143 (MQ=255) aCTCCTCCGTCAACTTGACTCATGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCTTTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGc < 2:614616/143‑1 (MQ=255) aCTCCGCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTACTACATCATTTGTATTACAGAAACAGGGCGCAAGCCCCG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGc < 1:1065251/143‑1 (MQ=255) ctccGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCa > 2:729134/1‑143 (MQ=255) gTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATCTGAATACGTTATTACTCCTTGCGGCACttt > 1:219808/1‑143 (MQ=255) cgcAACGTGACTCAGGTGGGCTGTGGCAACAACGCGACCGCTCACCAGTACTAATACATCATTGGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACttt < 1:616926/141‑1 (MQ=255) tCAACGTGACTCAGGTTTGCTTTGGTAACAACGCGACCGCTCGTATGTGCCAGTACATCATTTGTATTTCATAATCAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTc < 1:466274/143‑1 (MQ=255) cAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTcc < 1:729134/143‑1 (MQ=255) aaCGTGCCTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCTAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCa < 2:504779/143‑1 (MQ=255) aaCGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCa > 1:278496/1‑143 (MQ=255) tGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCa > 1:1032528/1‑143 (MQ=255) tCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATa > 1:676920/1‑143 (MQ=255) tCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACCTTCCAGTCAGATa > 2:992081/1‑143 (MQ=255) aGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAAc < 1:569674/143‑1 (MQ=255) gCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGGATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTaa < 2:9897/143‑1 (MQ=255) cTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTATTTTTAAGAAGAAGAATATGAATACGTTATTACTCCTTGCGGTACTTTCAAGTCAGATAACCTTTAAt > 2:388009/1‑143 (MQ=255) tttGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATa > 1:634688/1‑143 (MQ=255) tttGGTAACAACGCGACCGCTCATCAGTACTAATACATCATCTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCTCTTTCCACTCAGTTTACCTTCAATa > 1:198516/1‑143 (MQ=255) tGGTGACAACGCGACCGCTGGTCGGTACTAGTGCATCAGTTGGAGTACAGAAACAGGGCGCAAGCCCTG‑TGTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCGTTAATACg < 2:453737/143‑1 (MQ=255) tAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTCTTTCGGGAGAAGAATATGAATACGTTATTACCCCTTGCGGCACTTCCCAGCAAGATAACCTTTAATACGAcc > 2:1044882/1‑143 (MQ=255) acaacGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCa > 1:324684/1‑143 (MQ=255) cgcgACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCaa > 1:626365/1‑143 (MQ=255) cgcgACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCaa < 2:116635/143‑1 (MQ=255) gACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAggg > 1:370791/1‑143 (MQ=255) cGCTCATCAGTACTACTACATCATTTGTATGACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCGTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGAt < 2:85738/143‑1 (MQ=255) cGCTCATCAGTACTAATACATCATTTGTATTACAGAAACGGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGACGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGAt < 1:695710/143‑1 (MQ=255) cGCTCATAAGTTCTGATGCATTATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTCTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGAt < 2:323357/143‑1 (MQ=255) tcatcaGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCACTCCGATAACCTTTAATACGACCCATCAAGGGGAtgtg > 2:277293/1‑143 (MQ=255) aGTACTAATCCCTCATTTGGATGACAGAAACAGGATTGTTTTCCCG‑TGTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATAc < 2:1071614/143‑1 (MQ=255) gTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTATTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATAcc > 1:555874/1‑143 (MQ=255) gTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGGTATTACTCCTTGGGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATAcc > 1:903539/1‑143 (MQ=255) tAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCatta > 2:248586/1‑143 (MQ=255) aTACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGTAGAAGAATATGAATCCGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCCGCACGCCCCTGTGTATAccgcactt > 2:607437/1‑137 (MQ=255) aTACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACATTATTACTCCTTGCGGCACTTTCCAGTAAGATAACCTTTAATGCGACCCAGTAAGGGGCTGTGTATACGgttatt > 2:554512/1‑143 (MQ=255) atcatTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTg > 2:656839/1‑143 (MQ=255) atcatTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTg > 1:279716/1‑143 (MQ=255) tcatTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGa > 2:64919/1‑143 (MQ=255) cctttGTATTACAAAAACAGGGCGCAAGCCCGG‑TTTTTTGCCGGGAGAAGAAGATGACTACGTTATTACTCCTTGCGGCACTGGCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGaa < 2:1082084/141‑1 (MQ=255) ctttGTATTACAGAAACAGGGCGCAAGCCCTGTTTTTTTTTCGTGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGaa > 1:759952/2‑143 (MQ=255) aTTACAGAAACTGGGCGCTAGCCCTG‑TTTTTGTTCGGGAGAAGAATATGAATTCGTTATTACTCGTTGCGGCAGTTTCCAGTCAGATGACCTTTTACACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCActc < 2:894366/143‑1 (MQ=255) aCAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGACACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTa < 1:81561/143‑1 (MQ=255) | AATGACGGTTAAACAGTTCGGTGGTGGCAACGGTGCTGCAGTTGACCAGACTGCATCTAACTCCTCCGTCAACGTGACTCAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCATTTGTATTACAGAAACAGGGCGCAAGCCCTG‑TTTTTTTTCGGGAGAAGAATATGAATACGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATGTGTATACCATTATTCCTGAAGTCACTCTTA > NC_000913/1104782‑1105060 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |