New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1463445	78 (1.760)	5 (0.120)	4/250	NT	6.1%	intergenic (+7/‑94)	paaK/paaX	phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX
	?	NC_000913	= 1463482	79 (1.880)					intergenic (+44/‑57)	paaK/paaX	phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX

TGCCACCAGCTGCGCCATCGGATTAAGTCGATGGTGGGGATCTCTACCGATGTGATGATCGTTAACTGTGGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1463301‑1463445 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtatcgACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGACGATACGTCAGGCACCAACAATATTGCGCAGATCAAACACCCGACACGCCTTGCCTTCTGAACGCGGGATACTGCCACAGTTAACGATCATCACATCGGTAGA  <  NC_000913/1463482‑1463343                                                                                                                                                                                                                                                                                               TGCCACCAGCTGCGCCATCGCAGTAAGTGGATGGGGGGCAGCTCTACCGATGTGATGATCGTTAACTGTGGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTAT                                                                                                                                                <  2:384973/143‑1  GCCACCAGCTGCGCCATCGGATTAAGTCGATGGTGGGGATCTCTACCGATGTGATGATCGTTAACTGTGGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTATGATCTGCGCAATATTGTTGGTGCCTGCCGTATC                                                                                                                                               >  2:616302/1‑143                                  GTGGGGATCTCTACCGATGGGATGATCGTTAACCGTGGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGG                                                                                                               <  2:832584/143‑1                                   TGGGGATCTCTACCGATGTGATGATCGTTAACTGTGGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCG‑‑‑TCTGGCCCTGGCGCTTTACCCCACCAGGGCCA                                                                                                           <  2:89604/143‑1                                    ggtGATCTCTACCGATGTGATGATCTTTAACTGTTGCAGTATTCGCCGTTCAGAAGGCAAAGCGTGTCGGGTGCTTGATCGGCGCAATATTGTTGGTGCCTGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGC                                                                                                             <  1:57684/140‑1                                                  ATGTGATGATCTTTAACTGCGGCCGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGACGATACGTCA                                                                                               <  1:483345/143‑1                                                  ATGTGATGATCGTTAACTGTGGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGACGATACGTCA                                                                                               <  1:492534/143‑1                                                                                                                                           CGTATCGATCTCTGGCCCGGGGGCTTTACCCCACCCGGGCCAGACGATACGTCAGGCACCAACAATATTGCGCAGATCAAACACCCGACACGCCTTGCCTTCTGAACGCGGGATACTGCCACAGTTAACGATCATCACATCGG      <  2:872992/143‑1                                                                                                                                               TCGATTTCTGGCCCTAGCGCTTTACCCCACCAGGGCCAGACGATACGTCAGGCACCAACAATATTGCGCAGATCAAACACCCGACACGCCTTGCCTTCTGAACGCGGGATACTGCCACAGTTAACGATCATCACATCGGTAGA  <  2:676208/143‑1                                                                                                                                               TCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGACGATACGTCAGGCACCAACAATATTGCGCAGATCAAACACCCGACACGCCTTGCCTTCTGAACGCGGGATACTGCCACAGTTAACGATCATCACATCGGTAGA  <  1:57559/143‑1                                                                                                                                               TCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGACGATACGTCAGGCACCAACAATATTGCGCAGATCAAACACCCGACACGCCTTGCCTTCTGAACGCGGGATACTGCCACAGTTAACGATCATCACATCGGTAGA  >  2:35764/1‑143                                                                                                                                                                                                                                                                                               TGCCACCAGCTGCGCCATCGGATTAAGTCGATGGTGGGGATCTCTACCGATGTGATGATCGTTAACTGTGGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1463301‑1463445 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtatcgACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGACGATACGTCAGGCACCAACAATATTGCGCAGATCAAACACCCGACACGCCTTGCCTTCTGAACGCGGGATACTGCCACAGTTAACGATCATCACATCGGTAGA  <  NC_000913/1463482‑1463343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.