New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1417458 =	42 (0.900)	3 (0.070)	3/244	NT	7.5%	intergenic (‑72/+30)	recE/racC	Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific/Rac prophage; protein RacC
	?	NC_000913	1417483 =	35 (0.810)					intergenic (‑97/+5)	recE/racC	Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific/Rac prophage; protein RacC

ACTTGATGAAGGTGTCAAAAAAATGTGCCTGGTGCATATCGGAAAGAATCTGCCCGCAGAAAAAAAAGCCGAATTTCTGGCAACTCTAATTGCAATGAAATTAAAAGGTGAAATCTGAAAGAAATAGCCTGCGTATGGCGCAGGCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1417605‑1417458 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaggctatTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCT  >  NC_000913/1417483‑1417596                                                                                                                                                                                                                                                                        ACTTGATGAAGGTGTCAAAAAAATGTGCATGGTGCATATCGGAAAGAATCTGCCCGCAGAAAAAAAAGCCGAATTCCTGGCAACTCTAATTGCAATGAAATTAAAAGGTGAAATCTGAAAGAAATAGCCTGGGGATGGCGCAG                                                                                                                         >  2:290402/1‑143       ggagGGTGTAAAAAGACTGGGCCTGGTGCATCTCGGAAAGAATCTGCCCGCAGAAAAAAAAGCCGAATTTCTGGCAACTCTAATTGCAATGAAATTAAAAGGTGAAATCTGAAAGAAATAGCCTGCGTATGGCGCAGGCTATg                                                                                                                   <  2:833492/139‑2                                                                                 CAACTCTAATTGCAATGAAATTAACAGGTGAAATCTGAAAGAAATAGCCTGCGTATGGCGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGTCTTTCGGCTTTTTTTTCTGCGGGTAGc                                         >  2:631793/1‑142                                                                                                     TTAAAAGGTGAAATCTGAAAGAAATAGCCTGCGTATGGCGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCACTTAGAGTTGCCAGACCTTCGGCTTTTTTTTCTCTGGTCAGATTCTTTTCAATATGCACCAG                     >  1:262976/1‑143                                                                                                                        AGAAATAGCCTGCGTATGGCGCAGGCTATTTCTTTCAGATTTCAACTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTTTTTCAGATATGCCCCAGCCACATTTTTTTGATACCT  >  2:391060/1‑143                                                                                                                                                                                                                                                                        ACTTGATGAAGGTGTCAAAAAAATGTGCCTGGTGCATATCGGAAAGAATCTGCCCGCAGAAAAAAAAGCCGAATTTCTGGCAACTCTAATTGCAATGAAATTAAAAGGTGAAATCTGAAAGAAATAGCCTGCGTATGGCGCAGGCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1417605‑1417458 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaggctatTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCT  >  NC_000913/1417483‑1417596

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.