New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1417458 =	42 (0.900)	3 (0.070)	3/244	NT	7.5%	intergenic (‑72/+30)	recE/racC	Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific/Rac prophage; protein RacC
	?	NC_000913	1417483 =	35 (0.810)					intergenic (‑97/+5)	recE/racC	Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific/Rac prophage; protein RacC

CGTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCA  >  NC_000913/1417326‑1417599                                                                                                                                     |                                                                                                                                               cgTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTgcgc                                                                                                                                      <  2:138620/143‑1 (MQ=255)  gTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTCACCTCAACTCAGATTAAAATTCGTTTTGTTCCGTGAATGATCTTGCCGCATACCCGCTGTTCACAGCCTGCGcc                                                                                                                                     >  2:377786/1‑143 (MQ=255)       gTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTACCCTCAACTCCGATTAAAATTCGTTTTGTTCAGTGCATGATCTTGCCGGATACTAACTGTTCTTATCCTGCGccctgcg                                                                                                                                >  1:456845/1‑138 (MQ=255)       gTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACCCTGTTCATAGCCTGCGccgttct                                                                                                                                >  1:20854/1‑138 (MQ=255)        ttCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCCTTGTTTTTTAACCTCAACTAAGATTAAAATTAGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGc                                                                                                                               >  1:387941/1‑143 (MQ=255)          cACCGCATGATTGTTTCGCTTCCGGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCACATTAAAGTTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAg                                                                                                                             <  2:207582/143‑1 (MQ=255)            ccGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACTCCGGc                                                                                                                           >  1:479841/1‑143 (MQ=255)                  gatTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTAtttc                                                                                                                     >  1:815540/1‑143 (MQ=255)                   aggtatcaaaaaaatgtggctggggcatatctgaaaaaatctgcccgcagaaaaaaaagccgaatttctggcaactctaattgcaatgaaattaaaagttgaaatctgaaagaaATAGCCTGCGCCATACGCAGGCTAtttct                                                                                                                    >  2:391060‑M1/115‑143 (MQ=255)                     tttttCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGTCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTAtttcttt                                                                                                                  <  1:483189/143‑1 (MQ=255)                      ttttCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGGTCCTAGCCCTCCCCCTACGCAGGCTTtttctttc                                                                                                                 >  1:693263/1‑143 (MQ=255)                       tttCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCa                                                                                                                <  1:666499/143‑1 (MQ=255)                           gCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGAtt                                                                                                            >  2:34680/1‑143 (MQ=255)                                 cGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCCTAGCCTGCGCCATACGCCGGCTATTTCTTTAAGATTTCAACt                                                                                                      >  1:713690/1‑143 (MQ=255)                                    aaCAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCtttt                                                                                                   <  1:220295/143‑1 (MQ=255)                                      ctggtgcatattgaaaagaatctgaccagagaaaaaaaagccgaaggtctggcaactctaagtgcaatgaaattaaaaggtgaaatctgaaagaaATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTaa                                                                                                 >  1:262976‑M1/96‑143 (MQ=255)                                             agTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTACTTCTTTCAGATTTCACCTTTTACTTTCAtt                                                                                          >  2:775913/1‑143 (MQ=255)                                               tGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGc                                                                                        >  2:813512/1‑143 (MQ=255)                                                          gctacccgcagaaaaaaaagccgaaagactggcaactctaattgcaatgaaattaaaaggtgaaatctgaaagaaATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTGTTAATTTCATTGCAATTAGAGTTg                                                                             >  2:631793‑M1/76‑143 (MQ=255)                                                           cATTGTTTTTTAACCTTAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGc                                                                            <  2:213786/143‑1 (MQ=255)                                                             ttGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTCTTTCTTTCAGATTTCACCTTTTAATTTCATTACAATTAGAGTTGCCa                                                                          >  2:878537/1‑143 (MQ=255)                                                              tGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAg                                                                         >  2:489389/1‑143 (MQ=255)                                                              tGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAg                                                                         >  1:873111/1‑143 (MQ=255)                                                              tGTTTTTTAACCTCAACGCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAg                                                                         <  1:71691/143‑1 (MQ=255)                                                                ttttttAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACAGTTACTAGACTGCTCCGTACGCAGGCTATTCCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGccgaaa                                                                       >  2:60429/1‑139 (MQ=255)                                                                     tAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCg                                                                  <  2:856025/143‑1 (MQ=255)                                                                         cTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGACATTCGGC‑tt                                                             >  2:528546/1‑143 (MQ=255)                                                                               tCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTTTTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑tttttttt                                                       <  1:412050/143‑1 (MQ=255)                                                                               tCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑tttttttt                                                       >  1:748669/1‑143 (MQ=255)                                                                                   aTTAAAATTCGTTTTGAGCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGc                                                   <  1:50535/143‑1 (MQ=255)                                                                                     tAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCgg                                                 <  1:380469/143‑1 (MQ=255)                                                                                       aaaTTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGACATTCGGC‑TTTTTTTTCTGCGGGc                                               >  2:899215/1‑143 (MQ=255)                                                                                        aaTTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCa                                              >  1:806339/1‑143 (MQ=255)                                                                                          ttCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCCATTAGAGTTGCCCGAAATTCGGC‑TTTTTTTTCTGCGGGCAGa                                            >  1:368947/1‑143 (MQ=255)                                                                                          ttCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGa                                            <  2:694884/143‑1 (MQ=255)                                                                                            tgTTTTGTTCAGTGAATGCTCTTGCTGGATACGCACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGAtt                                          <  1:863514/142‑1 (MQ=255)                                                                                            cggtttGTGCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGAtt                                          <  1:903056/140‑1 (MQ=255)                                                                                              ttttGTTCAGTGAATGATCTTGCCGGATACACACTGTTTATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGCACTTCGGC‑TTTTTTTTCTGCGGCCTTATTCt                                        >  1:896925/1‑143 (MQ=255)                                                                                                             gATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCa                         <  1:598145/143‑1 (MQ=255)                                                                                                                gttGCCGCATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCCTTGCACTGGTAGTTGCCAGAAATGCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGc                      <  2:847691/142‑1 (MQ=255)                                                                                                                cTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGc                      <  1:559694/143‑1 (MQ=255)                                                                                                                          acacacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACAttttttt            <  1:542145/143‑1 (MQ=255)                                                                                                                           cacacTGTTCATAGCCTGTGCCATACGCAGGCTATTTCTTTCAGTTTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGATATTCGGCTTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACAttttttt            <  1:602482/143‑1 (MQ=255)                                                                                                                            acacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACCtttttttta          >  1:247439/1‑141 (MQ=255)                                                                                                                              acTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCCGATTCTTTCCGATAGGCACCAGGCACATTTGTTTGaca        >  1:528335/1‑143 (MQ=255)                                                                                                                                    cATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGAGATGCACCAGGCCCAGTCTTTTtacaccctcc  <  2:833492‑M1/142‑5 (MQ=255)                                                                                                                                    cATAGCCTGCGCCATACGCAGGCTATTTCTTTCAAATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCAAGAAATTCGGC‑TTTTTTTTTTGTGGGGAGATTCTTTGCGATAAACAACAGGTGGTTTTTTTTGacacaatca  >  2:840272/1‑138 (MQ=255)                                                                                                                                     |                                                                                                                                               CGTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCA  >  NC_000913/1417326‑1417599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.