New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1417458 =	42 (0.900)	3 (0.070)	3/244	NT	7.5%	intergenic (‑72/+30)	recE/racC	Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific/Rac prophage; protein RacC
	?	NC_000913	1417483 =	35 (0.810)					intergenic (‑97/+5)	recE/racC	Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific/Rac prophage; protein RacC

GATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTAC  >  NC_000913/1417343‑1417613                                                                                                                                             |                                                                                                                                    gatTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTAtttc                                                                                                                                   >  1:815540/1‑143 (MQ=255)  aggtatcaaaaaaatgtggctggggcatatctgaaaaaatctgcccgcagaaaaaaaagccgaatttctggcaactctaattgcaatgaaattaaaagttgaaatctgaaagaaATAGCCTGCGCCATACGCAGGCTAtttct                                                                                                                                  >  2:391060‑M1/115‑143 (MQ=255)    tttttCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGTCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTAtttcttt                                                                                                                                <  1:483189/143‑1 (MQ=255)     ttttCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGGTCCTAGCCCTCCCCCTACGCAGGCTTtttctttc                                                                                                                               >  1:693263/1‑143 (MQ=255)      tttCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCa                                                                                                                              <  1:666499/143‑1 (MQ=255)          gCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGAtt                                                                                                                          >  2:34680/1‑143 (MQ=255)                cGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCCTAGCCTGCGCCATACGCCGGCTATTTCTTTAAGATTTCAACt                                                                                                                    >  1:713690/1‑143 (MQ=255)                   aaCAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCtttt                                                                                                                 <  1:220295/143‑1 (MQ=255)                     ctggtgcatattgaaaagaatctgaccagagaaaaaaaagccgaaggtctggcaactctaagtgcaatgaaattaaaaggtgaaatctgaaagaaATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTaa                                                                                                               >  1:262976‑M1/96‑143 (MQ=255)                            agTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTACTTCTTTCAGATTTCACCTTTTACTTTCAtt                                                                                                        >  2:775913/1‑143 (MQ=255)                              tGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGc                                                                                                      >  2:813512/1‑143 (MQ=255)                                         gctacccgcagaaaaaaaagccgaaagactggcaactctaattgcaatgaaattaaaaggtgaaatctgaaagaaATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTGTTAATTTCATTGCAATTAGAGTTg                                                                                           >  2:631793‑M1/76‑143 (MQ=255)                                          cATTGTTTTTTAACCTTAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGc                                                                                          <  2:213786/143‑1 (MQ=255)                                            ttGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTCTTTCTTTCAGATTTCACCTTTTAATTTCATTACAATTAGAGTTGCCa                                                                                        >  2:878537/1‑143 (MQ=255)                                             tGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAg                                                                                       >  2:489389/1‑143 (MQ=255)                                             tGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAg                                                                                       >  1:873111/1‑143 (MQ=255)                                             tGTTTTTTAACCTCAACGCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAg                                                                                       <  1:71691/143‑1 (MQ=255)                                               ttttttAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACAGTTACTAGACTGCTCCGTACGCAGGCTATTCCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGccgaaa                                                                                     >  2:60429/1‑139 (MQ=255)                                                    tAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCg                                                                                <  2:856025/143‑1 (MQ=255)                                                        cTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGACATTCGGC‑tt                                                                           >  2:528546/1‑143 (MQ=255)                                                              tCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTTTTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑tttttttt                                                                     <  1:412050/143‑1 (MQ=255)                                                              tCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑tttttttt                                                                     >  1:748669/1‑143 (MQ=255)                                                                  aTTAAAATTCGTTTTGAGCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGc                                                                 <  1:50535/143‑1 (MQ=255)                                                                    tAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCgg                                                               <  1:380469/143‑1 (MQ=255)                                                                      aaaTTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGACATTCGGC‑TTTTTTTTCTGCGGGc                                                             >  2:899215/1‑143 (MQ=255)                                                                       aaTTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCa                                                            >  1:806339/1‑143 (MQ=255)                                                                         ttCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCCATTAGAGTTGCCCGAAATTCGGC‑TTTTTTTTCTGCGGGCAGa                                                          >  1:368947/1‑143 (MQ=255)                                                                         ttCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGa                                                          <  2:694884/143‑1 (MQ=255)                                                                         caactctaattgcaatgaaattaacaggtgaaatctgaaagaaatagcctgcgtatggcgcaggctatTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGTCTTTCGGC‑TTTTTTTTCTGCGGGTagc                                                          >  2:631793‑M2/69‑142 (MQ=255)                                                                           tgTTTTGTTCAGTGAATGCTCTTGCTGGATACGCACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGAtt                                                        <  1:863514/142‑1 (MQ=255)                                                                           cggtttGTGCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGAtt                                                        <  1:903056/140‑1 (MQ=255)                                                                             ttttGTTCAGTGAATGATCTTGCCGGATACACACTGTTTATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGCACTTCGGC‑TTTTTTTTCTGCGGCCTTATTCt                                                      >  1:896925/1‑143 (MQ=255)                                                                                            gATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCa                                       <  1:598145/143‑1 (MQ=255)                                                                                             ttaaaaggtgaaatctgaaagaaatagcctgcgtatggcgcaggctatTTCTTTCAGATTTCACCTTTTAATTTCATTGCACTTAGAGTTGCCAGACCTTCGGC‑TTTTTTTTCTCTGGTCAGATTCTTTTCAATATGCACCAg                                      >  1:262976‑M2/49‑143 (MQ=255)                                                                                               gttGCCGCATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCCTTGCACTGGTAGTTGCCAGAAATGCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGc                                    <  2:847691/142‑1 (MQ=255)                                                                                               cTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGc                                    <  1:559694/143‑1 (MQ=255)                                                                                                         acacacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACAttttttt                          <  1:542145/143‑1 (MQ=255)                                                                                                          cacacTGTTCATAGCCTGTGCCATACGCAGGCTATTTCTTTCAGTTTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGATATTCGGCTTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACAttttttt                          <  1:602482/143‑1 (MQ=255)                                                                                                           acacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACCtttttttta                        >  1:247439/1‑141 (MQ=255)                                                                                                             acTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCCGATTCTTTCCGATAGGCACCAGGCACATTTGTTTGaca                      >  1:528335/1‑143 (MQ=255)                                                                                                                agaaatagcctgcgtatggcgcaggctatTTCTTTCAGATTTCAACTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGATTTTTTCAGATATGCCCCAGCCACATTTTTTTGATACCt                   >  2:391060‑M2/30‑143 (MQ=255)                                                                                                                   cATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGAGATGCACCAGGCCCAGTCTTTTtacaccctcc                <  2:833492‑M1/142‑5 (MQ=255)                                                                                                                   cATAGCCTGCGCCATACGCAGGCTATTTCTTTCAAATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCAAGAAATTCGGC‑TTTTTTTTTTGTGGGGAGATTCTTTGCGATAAACAACAGGTGGTTTTTTTTGacacaatca                >  2:840272/1‑138 (MQ=255)                                                                                                                         CTGCGCCATCCCCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGGAATTCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCATGCACATTTTTTTGACACCTTCATCAAgt          >  2:290402‑M1/1‑143 (MQ=255)                                                                                                                               cATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGTC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTTTCACCTTCCTCAAGTGctttt    >  1:333033/1‑143 (MQ=255)                                                                                                                               cATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTtttttt    >  1:521523/1‑143 (MQ=255)                                                                                                                                 tACGCCGGCTATTTTGTTCAGATTTCTCCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTAc  <  2:387941/143‑1 (MQ=255)                                                                                                                                             |                                                                                                                                    GATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTAC  >  NC_000913/1417343‑1417613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.