New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4231923	41 (0.800)	4 (0.080)	3/256	NT	9.3%	coding (1311/1350 nt)	lysC	aspartate kinase III
	?	NC_000913	= 4231939	38 (0.760)					coding (1295/1350 nt)	lysC	aspartate kinase III

CGATAAAGACGCTGGTTAACAGAGTACAGGCTCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAAC  >  NC_000913/4231782‑4232064                                                                                                                                              |                                                                                                                                              cGATAAAGACGCTGGTTAACAGAGTACAGGCTCGTTTATTGATGAGCATAGTGACAAGAACATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCt                                                                                                                                              <  1:174232/143‑1 (MQ=255)    tAAAGACGCTGGTTAACAGAGTACATGCTCGTTTATTGATGAGCATAGTGACAAGAACATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCgg                                                                                                                                           <  2:687203/143‑1 (MQ=255)       aGACGCTGGTTAACAGAGTACAGGCTCGTCTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCAt                                                                                                                                        <  2:385127/143‑1 (MQ=255)        gACGCTGGTTAACAGAGTACAGGCTCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCGGCACCGGCTCGGCGTc                                                                                                                                       >  2:103086/1‑143 (MQ=255)         aCGCTGGTTAACAGAGTACAGGCTCGTTTATTGATGAGCATGGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCt                                                                                                                                      <  2:984823/143‑1 (MQ=255)          ctcTGGTGAACGGAGTACAGGCTCGTTGATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCGTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCtt                                                                                                                                     <  2:904536/141‑1 (MQ=255)             tGGTTAACAGAGTACAGGCTCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATACAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTCCACCCCCTGCCCGGCATCTTccc                                                                                                                                  >  2:757578/1‑141 (MQ=255)               gTTAACAGAGTACAGGCTCGTTTATTGATGAGCATAGTGACAAGAAAATCAAGACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCg                                                                                                                                <  2:575423/143‑1 (MQ=255)                    cAGAGTACAGGCTGGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAACTTACTATGCAGTTTTTGCACCACCTGCccggcgaagatgccgagcag                                                                                                                           <  1:263455‑M1/143‑21 (MQ=255)                    cAGAGTACAGGCTCGGTTATTGAGGAGCATAGTGACAAGCACCTGCCTCCCCCCCCAAACATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCccggcgaagatgccgagcag                                                                                                                           <  1:692710‑M1/143‑21 (MQ=255)                       agTACAGGCTCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAg                                                                                                                        >  1:480136/1‑143 (MQ=255)                           cAGGCTCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGATCGGCATATTCGACGGGCGCCAGGAAg                                                                                                                    >  2:173563/1‑143 (MQ=255)                                   tttatttaTGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGtt                                                                                                            <  1:345918/143‑1 (MQ=255)                                          atgaGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTg                                                                                                     >  1:512245/1‑143 (MQ=255)                                          atgaGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTCCGCCCGGCACCAGCAAGCACAGCATATGGCTg                                                                                                     >  2:131612/1‑143 (MQ=255)                                              gCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATg                                                                                                 <  2:148157/143‑1 (MQ=255)                                                 tAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGc                                                                                                                                  >  1:849604/1‑107 (MQ=255)                                                 tAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGc                                                                                                                                  <  2:849604/107‑1 (MQ=255)                                                          gAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCAATAAGaaa                                                                                     >  1:716262/1‑143 (MQ=255)                                                              aTCAATACGGCCCGAAATATAGCTTCCGGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCAt                                                                                 <  2:580533/143‑1 (MQ=255)                                                                  aTACGGCCCGAAATATAGCTTCACGGCGGTGCGTTATTTACTCAAACATATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGa                                                                             <  1:633575/143‑1 (MQ=255)                                                                   tACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGaa                                                                            <  1:255214/143‑1 (MQ=255)                                                                      tgcacGAAAGAGAGCTTCCAGGCCATACAGTATTTCCTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGt                                                                         <  1:541046/139‑1 (MQ=255)                                                                       gcgcGAGATATAGCTTCCAGGCCATATGGTATTTACTCAAACGAATTGCTATGCAGGTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGtt                                                                        <  2:270412/140‑1 (MQ=255)                                                                        cccGGAATTTAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCTTAACAAATCATGCGAATGGTg                                                                       <  2:774942/143‑1 (MQ=255)                                                                        cccGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTAGGGCTGGATGCGCCACAACAAATCATGCGAATGTTg                                                                       >  2:30662/1‑143 (MQ=255)                                                                               tataGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGtt                                                                <  2:780713/143‑1 (MQ=255)                                                                                 taGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAAAGGttgc                                                              >  2:287464/1‑141 (MQ=255)                                                                                         aGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAGTCATGCGAATGTTGAACGGTTCCAGCACGcc                                                      >  2:417283/1‑143 (MQ=255)                                                                                               tccAGTATTCAGTCAAACGAATTCCGACGCAGTTTTGGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATAc                                                <  1:858563/141‑1 (MQ=255)                                                                                               tACAGTAGTTACTCACGCAAGCTACGATGCAGTTTTTGCACCACCTGCTGGGCATCTTCGCCGTGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCTAATGTTGAACGGTTCCAGTACGCCGAATAc                                                <  2:707274/143‑1 (MQ=255)                                                                                                      tttACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTg                                         >  1:400321/1‑143 (MQ=255)                                                                                                      tttACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGGTGAACGGTTCCAGTACGCCGAATACCTCTTTg                                         >  1:242573/1‑143 (MQ=255)                                                                                                            caaacaaaTTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAAcg                                   <  1:439942/143‑1 (MQ=255)                                                                                                            caaacaaaTTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAAcg                                   <  2:120277/143‑1 (MQ=255)                                                                                                             aaacaaaTTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAAcgc                                  <  1:828149/143‑1 (MQ=255)                                                                                                             aaacaaaTTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAAcgc                                  >  1:833552/1‑143 (MQ=255)                                                                                                                 aaaTTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCa                              >  2:725644/1‑143 (MQ=255)                                                                                                                    ttACTATGCAGTTTTTGCACCACCTGCccggcgaagatgccgagc                                                                                                                             >  2:546744‑M1/1‑27 (MQ=255)                                                                                                                    ttACTATGCAGTTTTTGCACCACCTGCccggcgaagatgccgagc                                                                                                                             <  1:546744‑M1/45‑19 (MQ=255)                                                                                                                      aCTATGCAGTTTGTGCCGCACCTGCTCGGCATCGTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCtt                         <  2:1000734/143‑1 (MQ=255)                                                                                                                       cTATGCAGTTTTTGCACCCCCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCttt                        <  1:808202/143‑1 (MQ=255)                                                                                                                        tATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCtttt                       <  2:512245/143‑1 (MQ=255)                                                                                                                          tGCAGTTTGTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGa                     <  1:245672/143‑1 (MQ=255)                                                                                                                          tGCAGTGTTTGCACCACCTGCTCGGCATCTCCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTCCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGa                     <  2:258348/143‑1 (MQ=255)                                                                                                                                     caccacCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATACCAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGCCAGGCCACTGc          >  2:1016064/1‑143 (MQ=255)                                                                                                                                         accTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATTCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAAt      >  1:591844/1‑143 (MQ=255)                                                                                                                                           cTGCTCGGCATCTTCGCCGGgcaggtggtgcaaaaactgcatagtaatttgtttgagtaaatactgtatggcctggaagctatgtttggggggggaggcaggtgcttgtcactatgctcctcaataaccgagcctgtactctg    <  1:692710‑M2/143‑124 (MQ=255)                                                                                                                                           cTGCTCGGCATCTTCGCCGGgcaggtggtgcaaaaactgcatagtaagttgtttgagtaaatactgtatggcctggaagctatatttcgggccgtattgattttcttgtcactatgctcatcaataaaccagcctgtactctg    <  1:263455‑M2/143‑124 (MQ=255)                                                                                                                                            tGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCaa   <  1:626636/143‑1 (MQ=255)                                                                                                                                             gCTCGGCATCTTCGCCGGgcaggtggtgcaaaaactgcatagtaa                                                                                                    >  2:546744‑M2/1‑18 (MQ=255)                                                                                                                                             gCTCGGCATCTTCGCCGGgcaggtggtgcaaaaactgcatagtaa                                                                                                    <  1:546744‑M2/45‑28 (MQ=255)                                                                                                                                             gCTCGGCATCTTCGCCGGGCGCCAGGAAGCACAGGTTATGGCGGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAAc  <  1:136780/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                              CGATAAAGACGCTGGTTAACAGAGTACAGGCTCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAAC  >  NC_000913/4231782‑4232064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.