New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4231923	41 (0.800)	4 (0.080)	3/256	NT	9.3%	coding (1311/1350 nt)	lysC	aspartate kinase III
	?	NC_000913	= 4231939	38 (0.760)					coding (1295/1350 nt)	lysC	aspartate kinase III

AGTACAGGCTCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGACCAGCGCCAGA  >  NC_000913/4231804‑4232079                                                                                                                                        |                                                                                                                                             agTACAGGCTCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAg                                                                                                                                       >  1:480136/1‑143 (MQ=255)     cAGGCTCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGATCGGCATATTCGACGGGCGCCAGGAAg                                                                                                                                   >  2:173563/1‑143 (MQ=255)             tttatttaTGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGtt                                                                                                                           <  1:345918/143‑1 (MQ=255)                    atgaGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTg                                                                                                                    >  1:512245/1‑143 (MQ=255)                    atgaGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTCCGCCCGGCACCAGCAAGCACAGCATATGGCTg                                                                                                                    >  2:131612/1‑143 (MQ=255)                        gCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATg                                                                                                                <  2:148157/143‑1 (MQ=255)                                    gAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCAATAAGaaa                                                                                                    >  1:716262/1‑143 (MQ=255)                                        aTCAATACGGCCCGAAATATAGCTTCCGGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCAt                                                                                                <  2:580533/143‑1 (MQ=255)                                            aTACGGCCCGAAATATAGCTTCACGGCGGTGCGTTATTTACTCAAACATATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGa                                                                                            <  1:633575/143‑1 (MQ=255)                                             tACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGaa                                                                                           <  1:255214/143‑1 (MQ=255)                                                tgcacGAAAGAGAGCTTCCAGGCCATACAGTATTTCCTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGt                                                                                        <  1:541046/139‑1 (MQ=255)                                                 gcgcGAGATATAGCTTCCAGGCCATATGGTATTTACTCAAACGAATTGCTATGCAGGTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGtt                                                                                       <  2:270412/140‑1 (MQ=255)                                                  cccGGAATTTAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCTTAACAAATCATGCGAATGGTg                                                                                      <  2:774942/143‑1 (MQ=255)                                                  cccGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTAGGGCTGGATGCGCCACAACAAATCATGCGAATGTTg                                                                                      >  2:30662/1‑143 (MQ=255)                                                         tataGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGtt                                                                               <  2:780713/143‑1 (MQ=255)                                                           taGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAAAGGttgc                                                                             >  2:287464/1‑141 (MQ=255)                                                                   aGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAGTCATGCGAATGTTGAACGGTTCCAGCACGcc                                                                     >  2:417283/1‑143 (MQ=255)                                                                         tccAGTATTCAGTCAAACGAATTCCGACGCAGTTTTGGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATAc                                                               <  1:858563/141‑1 (MQ=255)                                                                         tACAGTAGTTACTCACGCAAGCTACGATGCAGTTTTTGCACCACCTGCTGGGCATCTTCGCCGTGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCTAATGTTGAACGGTTCCAGTACGCCGAATAc                                                               <  2:707274/143‑1 (MQ=255)                                                                                tttACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTg                                                        >  1:400321/1‑143 (MQ=255)                                                                                tttACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGGTGAACGGTTCCAGTACGCCGAATACCTCTTTg                                                        >  1:242573/1‑143 (MQ=255)                                                                                      caaacaaaTTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAAcg                                                  <  1:439942/143‑1 (MQ=255)                                                                                      caaacaaaTTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAAcg                                                  <  2:120277/143‑1 (MQ=255)                                                                                       aaacaaaTTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAAcgc                                                 <  1:828149/143‑1 (MQ=255)                                                                                       aaacaaaTTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAAcgc                                                 >  1:833552/1‑143 (MQ=255)                                                                                           aaaTTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCa                                             >  2:725644/1‑143 (MQ=255)                                                                                                aCTATGCAGTTTGTGCCGCACCTGCTCGGCATCGTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCtt                                        <  2:1000734/143‑1 (MQ=255)                                                                                                 cTATGCAGTTTTTGCACCCCCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCttt                                       <  1:808202/143‑1 (MQ=255)                                                                                                  tATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCtttt                                      <  2:512245/143‑1 (MQ=255)                                                                                                    tGCAGTTTGTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGa                                    <  1:245672/143‑1 (MQ=255)                                                                                                    tGCAGTGTTTGCACCACCTGCTCGGCATCTCCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTCCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGa                                    <  2:258348/143‑1 (MQ=255)                                                                                                               caccacCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATACCAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGCCAGGCCACTGc                         >  2:1016064/1‑143 (MQ=255)                                                                                                                   accTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATTCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAAt                     >  1:591844/1‑143 (MQ=255)                                                                                                                     cTGCTCGGCATCTTCGCCGGgcaggtggtgcaaaaactgcatagtaatttgtttgagtaaatactgtatggcctggaagctatgtttggggggggaggcaggtgcttgtcactatgctcctcaataaccgagcctgtactctg                   <  1:692710‑M2/143‑124 (MQ=255)                                                                                                                     cTGCTCGGCATCTTCGCCGGgcaggtggtgcaaaaactgcatagtaagttgtttgagtaaatactgtatggcctggaagctatatttcgggccgtattgattttcttgtcactatgctcatcaataaaccagcctgtactctg                   <  1:263455‑M2/143‑124 (MQ=255)                                                                                                                      tGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCaa                  <  1:626636/143‑1 (MQ=255)                                                                                                                       gCTCGGCATCTTCGCCGGgcaggtggtgcaaaaactgcatagtaa                                                                                                                   <  1:546744‑M2/45‑28 (MQ=255)                                                                                                                       gCTCGGCATCTTCGCCGGgcaggtggtgcaaaaactgcatagtaa                                                                                                                   >  2:546744‑M2/1‑18 (MQ=255)                                                                                                                       gCTCGGCATCTTCGCCGGGCGCCAGGAAGCACAGGTTATGGCGGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAAc                 <  1:136780/143‑1 (MQ=255)                                                                                                                         tccgCATCTTCGCCATGCACCCGGAAGCGTCGGTTGTTGCTTGATGTGCCATAACAAATCATGCTAATGTTGAACGGTTTCAGTACGCCGAATACCTCTCTGGCAGCGCCGCAGGCTTTTGACAGGTCATTGCCAATCAAcgc               <  2:310378/140‑1 (MQ=255)                                                                                                                         tCGGCATCTTCGCCGGGCACCAGGAAGTACTGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAAcgc               <  2:299215/143‑1 (MQ=255)                                                                                                                                  tCGCCGGGCACCAGGAAGCACAGGTTATGGCTGTATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGACCAgcgc      <  2:951380/143‑1 (MQ=255)                                                                                                                                   cGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATAGCAACTCCACCCGAGCGGCGcc     >  2:595875/1‑143 (MQ=255)                                                                                                                                     ccGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAAGGCGACCAGCGCCAg   >  1:51520/1‑143 (MQ=255)                                                                                                                                      cGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGACACGCGCCAGa  >  1:237256/1‑143 (MQ=255)                                                                                                                                        |                                                                                                                                             AGTACAGGCTCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGACCAGCGCCAGA  >  NC_000913/4231804‑4232079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.