New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4470450	NA (NA)	4 (0.130)	3/250	NT	NA	noncoding (20/29 nt)	other	REPv339b
	?	NC_000913	= 4470461	NA (NA)					noncoding (9/29 nt)	other	REPv339b

TCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4470303‑4470450 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAG  <  NC_000913/4470461‑4470330                                                                                                                                                                                                                                                                                          TCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGC                                                                                                                                           <  1:349076/143‑1      ACGGCGGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGGAGACAAAGTGAGGTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGAT                                                                                                                                      <  1:198395/143‑1                                     ATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCT                                                                                                       <  1:518897/143‑1                                     ATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTGATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCT                                                                                                       <  1:181588/143‑1                                          CCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGA                                                                                                                                       >  1:213171/1‑106                                          CCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGA                                                                                                                                       <  2:213171/106‑1                                          CCCGACTCAGATTGGAGACAAGGTCAGTTGTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAAGTCAATAAATTGCAGGAATCACGTAGGCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAAT                                                                                                  <  2:621836/143‑1                                                  atgTTGTAGACAGAGTTCTTTTTGTTCATGCCGGATGCGGCGTAGATGCCTTATCCGGCCAAGAAGTTCAATAAATTGCAGGCATCACGTAGGCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAA                                                                                          <  2:120747/140‑1                                                                                                                                          tctcgtCTGATGCTCTTCGCTTATCAGGCCTACGTGAGTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAG  <  2:112154/137‑1                                                                                                                                                                                                                                                                                          TCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4470303‑4470450 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAG  <  NC_000913/4470461‑4470330

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.