New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4470450	NA (NA)	4 (0.130)	3/250	NT	NA	noncoding (20/29 nt)	other	REPv339b
	?	NC_000913	= 4470461	NA (NA)					noncoding (9/29 nt)	other	REPv339b

ACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAAC  >  NC_000913/4470308‑4470592                                                                                                                                               |                                                                                                                                                aCGGCGGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGGAGACAAAGTGAGGTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGAT                                                                                                                                                 <  1:198395‑M1/143‑1 (MQ=255)       ggCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGCTTGTAGACAAAGTGAGTTTTGTTCATGCTGGATGCGGCGTAAATGGCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGt                                                                                                                                           >  1:316180/1‑143 (MQ=255)          aaTAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGCATCACGTGGGCCTGATAAGCGTAgc                                                                                                                                        >  2:245519/1‑143 (MQ=255)           aTAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGAAGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGTAATCACGTAGGCCCGATAAGCGTcgcg                                                                                                                                       >  2:67461/1‑143 (MQ=255)                       cTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGACTCACGTAGGCCTGATAAGCGAAGAGCatcagacgaga                                                                                                                           <  2:112154‑M2/143‑12 (MQ=255)                        tGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt                                                                                                                          >  1:176369/1‑143 (MQ=255)                           gCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATCAGCGTAGCGCATCAGGCGATTTCGc                                                                                                                       >  1:647506/1‑143 (MQ=255)                                aTAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATgcgctacgcttatcaggcctacgtgattcct                                                                                                                  <  1:518897‑M1/143‑32 (MQ=255)                                aTAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTGATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATgcgctacgcttatcaggcctacgtgattcct                                                                                                                  <  1:181588‑M1/143‑32 (MQ=255)                                    ccccGATTCAGATTGTAGACAAGGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtcat                                                                                                              <  2:469745/143‑1 (MQ=255)                                    ccccGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtcat                                                                                                              <  1:22629/143‑1 (MQ=255)                                     cccGACTCAGATTGGAGACAAGGTCAGTTGTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAAGTCAATAAATTGCAGGAATCACGTAGGCCTGATgcgctacgcttatcaggcctacgtgattcctgcaat                                                                                                             <  2:621836‑M1/143‑37 (MQ=255)                                           tCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATTAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACtt                                                                                                       >  1:338234/1‑143 (MQ=255)                                             atgttgtaGACAGAGTTCTTTTTGTTCATGCCGGATGCGGCGTAGATGCCTTATCCGGCCAAGAAGTTCAATAAATTGCAGGCATCACGTAGGCCTGATgcgctacgcttatcaggcctacgtgattcctgcaatttattgaa                                                                                                     <  2:120747‑M1/140‑45 (MQ=255)                                                   tAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCGTATCCGGCCAACAACTTGCGGGACGAGTGGTAAGCAAGTCGGAGAGGTGAACGCGTTGCATCAGGCTATTTTGCGTTTGTCATCAGACTTAATCCggg                                                                                               <  1:644961/143‑1 (MQ=12)                                                     gACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑a                                                                                            >  2:238211/1‑143 (MQ=255)                                                             gAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑GTGATCGcc                                                                                    >  1:317047/1‑143 (MQ=255)                                                             gAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGcc                                                                                    <  1:580511/143‑1 (MQ=255)                                                                      tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATTACGTAGGCTTTTTAAGCTTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCTATCAT‑GCCCGGAttaag                                                                           <  1:275559/143‑4 (MQ=37)                                                                      tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTcc                                                                           <  1:524520/143‑1 (MQ=255)                                                                         tGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATc                                                                        >  1:550791/1‑143 (MQ=255)                                                                                tGCGGCGTAAACGCCTTATCCGGCCAACAAATCCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTa                                                                 <  1:302373/143‑1 (MQ=255)                                                                                                 aTCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCg                                                >  1:507841/1‑143 (MQ=255)                                                                                                     ggCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTc                                            >  1:286689/1‑143 (MQ=255)                                                                                                              aTTCAATGAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAAt                                   <  1:234555/143‑1 (MQ=255)                                                                                                               ttCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcaggcctacgtgatgcctgcaatttattgaacttcttggccggataaggcatctacgccgcatccggcatgaacaaaaagaactctgtctacaacat                                   <  2:120747‑M2/143‑100 (MQ=255)                                                                                                                   aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCa                              <  1:266225/143‑1 (MQ=255)                                                                                                                    tAAATTGCAGGTATCAAGGAGGTCTGATAGGCGTAGCTCATCAGGCGATTTTGCGTTTGTCATCAGACGTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCAc                             <  2:65510/143‑1 (MQ=255)                                                                                                                    tAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCAc                             <  1:562510/143‑1 (MQ=255)                                                                                                                    tAAATTGCAGGAATCACGCAGGCCTGATAAGCGTAGCGCATCAGGCGAGTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCAc                             <  1:170760/143‑1 (MQ=255)                                                                                                                      aaTTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCACGCTTAGCGACGAACAGCGATCGCTTCGATCTGCATCTTCACgc                           >  1:249237/1‑142 (MQ=255)                                                                                                                       aTTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcaggcctacgtgattcctgcaatttattgactttgttggccggataaggcatttacgccgcatccggcatgaacacaactgaccttgtctccaatctgagtcggg                           <  2:621836‑M2/143‑108 (MQ=255)                                                                                                                       aTTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTc                          <  1:225443/143‑1 (MQ=255)                                                                                                                            aGGAATCAGGTAGGCCTGATAAGCGGAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCg                     <  2:264591/143‑1 (MQ=255)                                                                                                                            aGGAATCACGTAGGCCTGATAAGCGTAGCGCatcaggcctacgtgattcctgcaatttattgaatttgttggccggatcaggcatttacgccgcatccggcatgaacaaaactcactttgtctacaatctgaatcggggctat                      <  1:181588‑M2/143‑113 (MQ=255)                                                                                                                            aGGAATCACGTAGGCCTGATAAGCGTAGCGCatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggcatttacgccgcatccggcatgaacaaaactcactttgtctacaatctgaatcggggctat                      <  1:518897‑M2/143‑113 (MQ=255)                                                                                                                            aGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCg                     <  1:238211/143‑1 (MQ=255)                                                                                                                                     tctcgtctgatgctcttcgcttatcaggcctacgtgagtcctgcaatttattgaatttgttggccggataaggcatttacgccgcatccggcatgaacaaaactcactttgtctacaatctgaatcggggctatcgtgcccag             <  2:112154‑M1/137‑133 (MQ=255)                                                                                                                                     gTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACggg            >  2:269715/1‑143 (MQ=255)                                                                                                                                               tAAGCGTAGCGTATCAGGCGATTTTGCGTTTGTCACCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAAc  <  1:67461/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                ACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAAC  >  NC_000913/4470308‑4470592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.