New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4470450	NA (NA)	4 (0.130)	3/250	NT	NA	noncoding (20/29 nt)	other	REPv339b
	?	NC_000913	= 4470461	NA (NA)					noncoding (9/29 nt)	other	REPv339b

CTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTG  >  NC_000913/4470330‑4470603                                                                                                                                    |                                                                                                                                                cTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGACTCACGTAGGCCTGATAAGCGAAGAGCatcagacgaga                                                                                                                                      <  2:112154‑M2/143‑12 (MQ=255)  tGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt                                                                                                                                     >  1:176369/1‑143 (MQ=255)     gCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATCAGCGTAGCGCATCAGGCGATTTCGc                                                                                                                                  >  1:647506/1‑143 (MQ=255)              ccccGATTCAGATTGTAGACAAGGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtcat                                                                                                                         <  2:469745/143‑1 (MQ=255)              ccccGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtcat                                                                                                                         <  1:22629/143‑1 (MQ=255)                     tCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATTAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACtt                                                                                                                  >  1:338234/1‑143 (MQ=255)                             tAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCGTATCCGGCCAACAACTTGCGGGACGAGTGGTAAGCAAGTCGGAGAGGTGAACGCGTTGCATCAGGCTATTTTGCGTTTGTCATCAGACTTAATCCggg                                                                                                          <  1:644961/143‑1 (MQ=12)                               gACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑a                                                                                                       >  2:238211/1‑143 (MQ=255)                                       gAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑GTGATCGcc                                                                                               >  1:317047/1‑143 (MQ=255)                                       gAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGcc                                                                                               <  1:580511/143‑1 (MQ=255)                                                tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATTACGTAGGCTTTTTAAGCTTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCTATCAT‑GCCCGGAttaag                                                                                      <  1:275559/143‑4 (MQ=37)                                                tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTcc                                                                                      <  1:524520/143‑1 (MQ=255)                                                   tGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATc                                                                                   >  1:550791/1‑143 (MQ=255)                                                          tGCGGCGTAAACGCCTTATCCGGCCAACAAATCCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTa                                                                            <  1:302373/143‑1 (MQ=255)                                                                           aTCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCg                                                           >  1:507841/1‑143 (MQ=255)                                                                               ggCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTc                                                       >  1:286689/1‑143 (MQ=255)                                                                                        aTTCAATGAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAAt                                              <  1:234555/143‑1 (MQ=255)                                                                                         ttCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcaggcctacgtgatgcctgcaatttattgaacttcttggccggataaggcatctacgccgcatccggcatgaacaaaaagaactctgtctacaacat                                              <  2:120747‑M2/143‑100 (MQ=255)                                                                                             aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCa                                         <  1:266225/143‑1 (MQ=255)                                                                                              tAAATTGCAGGTATCAAGGAGGTCTGATAGGCGTAGCTCATCAGGCGATTTTGCGTTTGTCATCAGACGTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCAc                                        <  2:65510/143‑1 (MQ=255)                                                                                              tAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCAc                                        <  1:562510/143‑1 (MQ=255)                                                                                              tAAATTGCAGGAATCACGCAGGCCTGATAAGCGTAGCGCATCAGGCGAGTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCAc                                        <  1:170760/143‑1 (MQ=255)                                                                                                aaTTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCACGCTTAGCGACGAACAGCGATCGCTTCGATCTGCATCTTCACgc                                      >  1:249237/1‑142 (MQ=255)                                                                                                 aTTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcaggcctacgtgattcctgcaatttattgactttgttggccggataaggcatttacgccgcatccggcatgaacacaactgaccttgtctccaatctgagtcggg                                      <  2:621836‑M2/143‑108 (MQ=255)                                                                                                 aTTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTc                                     <  1:225443/143‑1 (MQ=255)                                                                                                      aGGAATCAGGTAGGCCTGATAAGCGGAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCg                                <  2:264591/143‑1 (MQ=255)                                                                                                      aGGAATCACGTAGGCCTGATAAGCGTAGCGCatcaggcctacgtgattcctgcaatttattgaatttgttggccggatcaggcatttacgccgcatccggcatgaacaaaactcactttgtctacaatctgaatcggggctat                                 <  1:181588‑M2/143‑113 (MQ=255)                                                                                                      aGGAATCACGTAGGCCTGATAAGCGTAGCGCatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggcatttacgccgcatccggcatgaacaaaactcactttgtctacaatctgaatcggggctat                                 <  1:518897‑M2/143‑113 (MQ=255)                                                                                                      aGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCg                                <  1:238211/143‑1 (MQ=255)                                                                                                               gTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACggg                       >  2:269715/1‑143 (MQ=255)                                                                                                                         tAAGCGTAGCGTATCAGGCGATTTTGCGTTTGTCACCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAAc             <  1:67461/143‑1 (MQ=255)                                                                                                                                    cATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTg  <  1:557774/143‑1 (MQ=255)                                                                                                                                    |                                                                                                                                                CTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTG  >  NC_000913/4470330‑4470603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.