New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3726897	36 (0.790)	3 (0.070)	3/242	NT	8.1%	intergenic (+15/+27)	wecH/yiaA	O‑acetyltransferase WecH/conserved inner membrane protein YiaA
	?	NC_000913	= 3726905	35 (0.830)					intergenic (+23/+19)	wecH/yiaA	O‑acetyltransferase WecH/conserved inner membrane protein YiaA

CGCTGCGCACCCGGGGAATTGAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3726746‑3726897 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcccggtcaGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATAGAAAGTAACAAACTCGCTGCCAACGTCGCGCAAAAGATCCAAATAATATCCAGTATTGGCCAATTTTTAAGCTCAA  <  NC_000913/3726905‑3726764                                                                                                                                                                                                                                                                                                        CGCTGCGCACCCGGGGAAGTGAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAA                                                                                                                                                         <  1:387094/143‑1                             AAATTGGCCAATACTGGATATTATTTGGATCCTGTGCGCGACGTTTGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCAGTCCAATGTGACCGGGCTT                                                                                                                             <  1:335438/143‑1                                              ATATTATTTGGATCTTTTGCGCGACGTTGGCAGTGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAAT                                                                                                            <  1:731885/143‑1                                                ATTATTTGGATCTGTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCT                                                                                                          <  1:304317/143‑1                                                                                                                                                  CCGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATAGAAAGTAACAAACTCGCTGCCAACGTCGCGCAAAAGATCCAAATAATATCCAGTATTGGCCAATTTTTAA        <  1:661306/143‑1                                                                                                                                                   CGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATGGAAAGTAACAAACTCGCTGCCAACGGCGCGCCAAAGATCCAACTAATATCCAGTATTGGCCAATGTTTAAG       >  2:418556/1‑143                                                                                                                                                   CGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATCGAAAGTAACAAACTCGCTGCCAACGTCGCGCAAAAGATCCAAATAATATCCAGTATTGGCCAATTTTTAAG       >  2:71583/1‑143                                                                                                                                                        AGTCCAATGTGACCGGGCTTTTATTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATAGAAAGTAACAAACTCGCTGCCAACGTCGCGCAAAAGATCCAAATAATATCCAGTATTGGCCAATTTTTAAGCTCAA  <  2:732574/143‑1                                                                                                                                                                                                                                                                                                        CGCTGCGCACCCGGGGAATTGAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3726746‑3726897 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcccggtcaGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATAGAAAGTAACAAACTCGCTGCCAACGTCGCGCAAAAGATCCAAATAATATCCAGTATTGGCCAATTTTTAAGCTCAA  <  NC_000913/3726905‑3726764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.