New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3726897	36 (0.790)	3 (0.070)	3/242	NT	8.1%	intergenic (+15/+27)	wecH/yiaA	O‑acetyltransferase WecH/conserved inner membrane protein YiaA
	?	NC_000913	= 3726905	35 (0.830)					intergenic (+23/+19)	wecH/yiaA	O‑acetyltransferase WecH/conserved inner membrane protein YiaA

CCGGGGAATTGAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGTGGGTTTATTCCGGCATCACGAATATTTTTCTGCACCGCTACTGCACCAAACAAGCTTAAGAAGAAAGCCAGTC  >  NC_000913/3726756‑3727039                                                                                                                                              |                                                                                                                                               ccGGGGAATTGAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTcac                                                                                                                                               >  2:558817/1‑143 (MQ=255)   ggggAATTGAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACAt                                                                                                                                             >  1:190671/1‑143 (MQ=255)   ggggAATTGAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAAACGATTAGTGTGTTAAGTAAAAGCCCGGTCACAt                                                                                                                                             >  1:644508/1‑143 (MQ=255)    gggAATTGAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAACAGCCCGGTCACAtt                                                                                                                                            >  1:222786/1‑143 (MQ=255)       aaTTGAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGa                                                                                                                                         <  1:585356/143‑1 (MQ=255)         ttGAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAATAAAAGCCCGGTCACATTGGACt                                                                                                                                       <  2:732574‑M2/143‑2 (MQ=255)              cTTAAACATTGGCCAATACTGGATATTAGTTGGATCTTTGGCGCGCCGTTGGCAGCGAGTTTGTTACTTTCCATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACtgaccg                                                                                                                                  >  2:418556‑M2/1‑137 (MQ=255)              cTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCGATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACtgaccg                                                                                                                                  >  2:71583‑M2/1‑137 (MQ=255)               ttAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACtgaccgg                                                                                                                                 <  1:661306‑M2/143‑8 (MQ=255)                   aaaTTGGCCAATACTGGATATTATTTGGATCCTGTGCGCGACGTTTGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCAgtccaatgtgaccgggctt                                                                                                                             <  1:335438‑M1/143‑20 (MQ=255)                    aaTTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTa                                                                                                                            >  1:150367/1‑143 (MQ=255)                       tGGCCAACACTGGATATTATTTGGATCGTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAGCGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGt                                                                                                                         <  1:54805/143‑1 (MQ=255)                                cTGGAGATTATTTGGCTTTGTTGCGCGTCGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAATATCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTc                                                                                                                <  2:97736/143‑1 (MQ=255)                                  ggATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGc                                                                                                              >  1:496420/1‑143 (MQ=255)                                    atatTATTTGGATCTTTTGCGCGACGTTGGCAGTGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCAgtccaatgtgaccgggcttttacttaactcactaat                                                                                                            <  1:731885‑M1/143‑37 (MQ=255)                                      attattTGGATCTGTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCAgtccaatgtgaccgggcttttacttaactcactaatct                                                                                                          <  1:304317‑M1/143‑39 (MQ=255)                                         attTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTAttc                                                                                                       >  1:716007/1‑143 (MQ=255)                                             ggATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTcc                                                                                                   >  1:499306/1‑143 (MQ=255)                                                tCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTgg                                                                                                >  1:210857/1‑143 (MQ=255)                                                tCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTgg                                                                                                >  1:734012/1‑143 (MQ=255)                                                         cgACGTTGGCAGCGAGTTTATTACTGTCTATGCTGGTACAACGAAGCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGAACTGACCGGGCTTACGTGAGTTATTCGCTCCATTCTTCGTGAGTGACgtgt                                                                                       >  2:238742/1‑143 (MQ=255)                                                          gACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCtgtg                                                                                      >  1:694552/1‑143 (MQ=255)                                                                  cAGCGAGTTTGTTACTTGCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCtttt                                                                              <  2:866262/143‑1 (MQ=255)                                                                   aGCGGGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTCAGTAAAAGCCCGGTCTCATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTtg                                                                             <  2:448938/143‑1 (MQ=255)                                                                   aGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATGCGCTGTACTCTTCCTGGGTAACCTGTGTTTCTTTtg                                                                             >  2:630760/1‑143 (MQ=255)                                                                     cGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTtggt                                                                           <  2:661306/143‑1 (MQ=255)                                                                       aGTGTGTTAGTTTCTGTGCTGGGACAACGACTCGACAGAAACAGATTAGTGGGTTAAGTAAACGCCCTGTCCCATAGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTtggtgg                                                                         <  2:455288/143‑1 (MQ=255)                                                                         tttGTTACTGTCTATGCTGGTACCACGAATCGACAGAAACAGATGAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGTGGGt                                                                       <  2:97437/143‑1 (MQ=255)                                                                               aCTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGTGGGTTTATTc                                                                 >  1:732849/1‑143 (MQ=255)                                                                                 tttCTATGCTGGTACAACGAATCGACAGAACCAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGTGGGTTTATTCCg                                                               <  2:712488/143‑1 (MQ=255)                                                                                          tGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGTGGGTTTATTCCGGCATCACGa                                                      >  2:656702/1‑143 (MQ=255)                                                                                          tGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGTGGGTTTATGCCGGCATCACGa                                                      >  2:167299/1‑143 (MQ=255)                                                                                                 aCGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCGTTTGGTGGGTTTATTCGGGCATCCAGAATAtatt                                               >  2:708436/1‑143 (MQ=255)                                                                                                    aaTCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGTGGGTTTATTCCGGCATCACGAATATTTTTCt                                            <  1:438865/143‑1 (MQ=255)                                                                                                         aCAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGAGTAACCTGTGTTTCTTTTGGTGGGTTTATTCCGGCATCACGAATATTTTACTGcccg                                       >  2:309373/1‑140 (MQ=255)                                                                                                              aaCAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGTGGGTTTATTCCGGCATCACGAATATTTTTCTGCACCGCTAc                                  >  2:894934/1‑143 (MQ=255)                                                                                                               aCAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGTGGGTTTATTCCGGCATCACGAATATTTTTCTGCACCGCTACt                                 >  1:403977/1‑143 (MQ=255)                                                                                                               aCAGATTAGGGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGTGGGTTTATTCCGGCATCACGAATATTTTTCTGCACCGCTACt                                 <  1:775015/143‑1 (MQ=255)                                                                                                                 aGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACtgaccgggcttttacttaactcactaatctgtttctgtcgattcgttgtaccagcatagaaagtaacaaactcgctgccaacgtcgcgcaacagatccaaataat                               <  1:304317‑M2/143‑106 (MQ=255)                                                                                                                   aTTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACtgaccgggcttttacttaactcactaatctgtttctgtcgattcgttgtaccagcatagaaagtaacaaactcactgccaacgtcgcgcaaaagatccaaataatat                             <  1:731885‑M2/143‑108 (MQ=255)                                                                                                                     tAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGTGGGTTTATTCCGGCATCACGAATATTTTTCTGCACCGATACTGGActa                           >  1:682939/1‑141 (MQ=255)                                                                                                                       gTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGTGGGTTTATTCCGGCATCACGAATATTTTTCTGCACCGCTACTGCACCaaa                         <  1:94557/143‑1 (MQ=255)                                                                                                                        tGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGTGGGTTTATTCCGGCATCACGAATATTTTTCTGCACCGCTACTGCACCAAAc                        >  1:304486/1‑143 (MQ=255)                                                                                                                        gtggTTAAGGAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTAGTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGCGGGTTTATTCCGGCATCATGAATATTTTTCTGCACCGCTACTGCACCAAAc                        <  2:477298/140‑1 (MQ=255)                                                                                                                                gTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGTGGGTTTATTCCGGCATCACGAATATTTTTCTGCACCGCTACTGCACCAAACAAGCTTaa                >  2:233798/1‑143 (MQ=255)                                                                                                                                gTAAAAGCACGGTCGCATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGTGGGTTTATTCCGGCATCACGAATATTTTTCTGCACCGCTACTGCACCAAACAAGCTTaa                <  1:386196/143‑1 (MQ=255)                                                                                                                                 tAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGTGGGTTTATTCCGGCATCACGAATATTTTTCTGCACCGCTACTGCACCAAACAAGCTTaag               <  2:732849/143‑1 (MQ=255)                                                                                                                                    aaGCCCGGTCACATTGGACtgaccgggcttttacttaactcactaatctgtttctgtcgattcgttgtaccagcatagaaagtaacaaactcgctgcaaacgtcgcgcacaggatccaaataatatccagtattggccaattt            <  1:335438‑M2/143‑125 (MQ=255)                                                                                                                                       cccGGTCACATTTGACTGCTCGTGCTTACGTGAGTTATTCGCTGTATTCTTCCTTGGTAACCTGTGTTTCTTTTGGTGGGTTTATTCCGGCATCACGAATATTTTTCTGCACCGCTACTGCACCAAACAAGCTTAAGAAGaaa         <  2:694552/143‑1 (MQ=255)                                                                                                                                       cccGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTGTTGGTGGGTTTATTCCGGCATCACGAATATTTTTCTGCACCGCTACTGCACCAACCACGCTTAAGAAGaaa         >  2:747145/1‑143 (MQ=255)                                                                                                                                        ccGGTCAgtccaatgtgaccgggcttttacttaactcactaatctgtttctgtcgattcgttgtaccagcatagaaagtaacaaactcgctgccaacgtcgcgcaaaagatccaaataatatccagtattggccaatttttaa        <  1:661306‑M1/143‑137 (MQ=255)                                                                                                                                         cGGTCAgtccaatgtgaccgggcttttacttaactcactaatctgtttctgtcgattcgttgtaccagcatggaaagtaacaaactcgctgccaacggcgcgccaaagatccaactaatatccagtattggccaatgtttaag       >  2:418556‑M1/1‑6 (MQ=255)                                                                                                                                         cGGTCAgtccaatgtgaccgggcttttacttaactcactaatctgtttctgtcgattcgttgtaccagcatcgaaagtaacaaactcgctgccaacgtcgcgcaaaagatccaaataatatccagtattggccaatttttaag       >  2:71583‑M1/1‑6 (MQ=255)                                                                                                                                          ggTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCATTTGGTGGGTTTATTCCGGCAACACGAATATTGTTCTGCAACGCTACTGCACCAAACAGGCTTAAGaagcaagcg      >  2:284709/1‑142 (MQ=255)                                                                                                                                              agtccaatgtgaccgggcttttatttaactcactaatctgtttctgtcgattcgttgtaccagcatagaaagtaacaaactcgctgccaacgtcgcgcaaaagatccaaataatatccagtattggccaatttttaagctcaa  <  2:732574‑M1/143‑143 (MQ=255)                                                                                                                                              |                                                                                                                                               CCGGGGAATTGAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCACATTGGACTGACCGGGCTTACGTGAGTTATTCGCTGTATTCTTCCTGGGTAACCTGTGTTTCTTTTGGTGGGTTTATTCCGGCATCACGAATATTTTTCTGCACCGCTACTGCACCAAACAAGCTTAAGAAGAAAGCCAGTC  >  NC_000913/3726756‑3727039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.