| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 103078 | 46 (1.150) | 4 (0.100) | 4/254 | NT | 8.8% | coding (846/921 nt) | ddlB | D‑alanine‑‑D‑alanine ligase B |
| ? | NC_000913 | = 103096 | 39 (1.020) | coding (864/921 nt) | ddlB | D‑alanine‑‑D‑alanine ligase B | |||||
AGGCCAATTTGCAGGCATTAGTGCTGAAAGCATGGACGACGTTAGGTTGCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/102933‑103078‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgACGTGCCGCCATCGGCACCAGGCTGTGGCTGGTCATACCCGGTGAGGTATTGGCTTCCAGCAGATAAAACTGTCCATCGCTGTCCAGCATAACGTCAATACGTCCCCATCCTTTGCAACCTAACGTCGTCCATGCTTTCAGC < NC_000913/103096‑102955 AGGCCAATTTGCAGGCATTAGTGCTGAAAGCATGGACGACGTTAGGTTGCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGC > 1:520706/1‑143 GCCAATTTGCAGGCATTAGTGCTGAAAGCATGGACGACGTTAGGTTGCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTCTTATCTGCTGGAGGTCCAGACTTCACCGGGTATGACCAGCCACAGCCT > 1:741765/1‑143 gtAAGCATGGACGACGTTAGGTTGCAAAGGATGTGGACGTATTGACGTTATGCTGGACAGCGATGGACATTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGACGTGCCGCTATCGGCACCAGG < 1:36466/141‑1 cggTAGGGTGCAACGGATGGGGAGGGATGGACGTTATGCGGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTG‑‑GTGCCGCCATCGGCACCAGGCTGTGGCTGGTCATAC < 1:390758/140‑1 CGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGACGTGCCGCCATCGGCACCAGGCTGTGGCTGGTCATTCCCGGTGAGGTATTG < 1:561278/113‑1 CGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGACGTGCCGCCATCGGCACCAGGCTGTGGCTGGTCATACCCGGTGAGGTATTG > 2:561278/1‑113 ggCTGACGTGGCGCCATCGGCACCAGGCTGTGGCTGGTCATACCCGGTGAGGTATTGGCTTCCAGCAGATAAAACTGTCCATCGCTGTCCAGCATAACGTCAATACGTCCCCATCCTTTGCAACCTAACGTCGTCCATGCTTT < 2:391386/141‑1 CCTGACGTGCCGCCATCGGCACCAGGCTGTGGCTGGTCATACCCGGTGAGGTATTGGCTTCCAGCAGATAAAACTGTCCATCGCTGTCCACCATAACTTCTATACGTCCCCATCCTTTGCAACCTGACGTCGTCCATGCTTgc > 2:14417/1‑141 TGACGTGCCGCCATCGGCACCAGGCTGTGGCTGGTCATACCCGGTGAGGTATTGGCTTCCAGCAGATAAAACTGTCCATCGCTGTCCAGCATAACGTCAATACGTCCCTATCCTTTGCAACCTAACGTCGTGCATGCTTTacg > 1:465792/1‑140 GACGTGCCGCCATCGGCACCAGGCTGTGGCTGGTCATACCCGGTGAGGTATTGGCTTCCAGCAGATAAAACTGTCCATCGCTGTCCAGCATAACGTCAATACGTCCCCATCATTTGCAACCTAACGTCGTCCATGCTTTCAGC > 2:577351/1‑143 AGGCCAATTTGCAGGCATTAGTGCTGAAAGCATGGACGACGTTAGGTTGCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/102933‑103078‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgACGTGCCGCCATCGGCACCAGGCTGTGGCTGGTCATACCCGGTGAGGTATTGGCTTCCAGCAGATAAAACTGTCCATCGCTGTCCAGCATAACGTCAATACGTCCCCATCCTTTGCAACCTAACGTCGTCCATGCTTTCAGC < NC_000913/103096‑102955 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |