New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 103078	46 (1.150)	4 (0.100)	4/254	NT	8.8%	coding (846/921 nt)	ddlB	D‑alanine‑‑D‑alanine ligase B
	?	NC_000913	= 103096	39 (1.020)					coding (864/921 nt)	ddlB	D‑alanine‑‑D‑alanine ligase B

GCTGAAAGCATGGACGACGTTAGGTTGCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATATGTCGCAGGCTGCTCTGAACACGCGAAACAGCGAAGAAGAGGTTTCTTCTCGCCGCAATAATGGAACGCGTCTGGCGG  >  NC_000913/102955‑103233                                                                                                                                              |                                                                                                                                          gCTGAAAGCATGGACGACGTTAGGTTGCAAATGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTc                                                                                                                                          >  2:577351‑M2/1‑142 (MQ=255)  cgtaaagcaTGCACGACGTTAGGTTGCAAAGGATAGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTca                                                                                                                                         >  1:465792‑M2/4‑141 (MQ=255)    gcaagcATGGACGACGTCAGGTTGCAAAGGATGGGGACGTATAGAAGTTATGGTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTcagg                                                                                                                                       >  2:14417‑M2/3‑139 (MQ=255)     aaaGCATGGACGACGTTAGGTTGCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGCCACGTcagcc                                                                                                                                      <  2:391386‑M2/143‑6 (MQ=255)      aaGCATGGGCGACGTTAGGTTGCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTcaggca                                                                                                                                     <  1:724637/143‑1 (MQ=255)        gCATGGACGACGTTAGGTTGCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGCTGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTcaggcagg                                                                                                                                   >  2:277710/1‑143 (MQ=255)          atcgacggcGGTAGGTTGCGAAGGATGGGGACGTATTGACGTTAGGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTa                                                                                                                                 <  1:529804/140‑1 (MQ=255)          aTGGACGACGTTAGGTTGCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTGTGGGCCGCCACAGCCTGGTGCCGCTGGCGGCACGTCAGGCAGGTa                                                                                                                                 >  2:162869/1‑143 (MQ=255)              acgacgTTAGGTTGCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCATAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAg                                                                                                                             >  2:186348/1‑143 (MQ=255)              acgacgTTAGGTTGCAAAGGATGGGGACGGATTGACGTTATGCTGGCCAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAg                                                                                                                             <  1:408483/143‑1 (MQ=255)                   gTTAGGTTGCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGCATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTtct                                                                                                                        >  1:536649/1‑143 (MQ=255)                     tAGGTTGCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGCGCTTCTCg                                                                                                                      >  2:91820/1‑143 (MQ=255)                         ttGCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATAACCAGCCAAAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGCGCTTCTCGCAGt                                                                                                                  >  1:68813/1‑143 (MQ=255)                           gCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTg                                                                                                                <  2:520706/143‑1 (MQ=255)                            cAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGCTGGCGGCACGTCAGGCAGGTATGAGCTGCTCGCAGTTgg                                                                                                               >  2:605524/1‑143 (MQ=255)                             aaaGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTTGGGCCGATGGCGGCACGTCAGGCAGGTGGGAGCTTCTCGCAGTTgct                                                                                                              >  1:88176/1‑141 (MQ=255)                                  aTGGTGACGTATTGACGTTATGCTAGACAGCGATTGACAGTTTTATCTGCTAGGGGCCAATACCTCACCGGTTATGACCAGCCACAGCCTGGTGCCGATGTCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTAc                                                                                                         <  2:513961/143‑1 (MQ=255)                                         ggTATTGACGTTATGCTGGACAGCGACGGACAGTTTTATCTGCTGGAAGCCAAGACCTCACCGGGTATGACCAGCCACAGGCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCt                                                                                                  <  2:519448/142‑1 (MQ=255)                                         cGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCt                                                                                                  <  1:385406/143‑1 (MQ=255)                                           tATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTCTGAGCTTCTCGCAGTTGGTAGTACGAATTCCgg                                                                                                >  2:629060/1‑143 (MQ=255)                                             ttaaCGTTATGCTGAACAGCGATGGACAGATTTATCTGCTTGAACCCAAGACGTCACCGGTAATGACCAGCCAGAGCCTGGTGCGACTGGCGGCACGTCGCGCAGGTATGAGCTTCTCGCAGTTGGGAGTACGTATTCTGGaa                                                                                              >  2:752192/4‑143 (MQ=255)                                             ttGACGTTATGCTGGACAGCGATGGGCAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACCGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGGACGAATGCGGGaa                                                                                              >  2:539555/1‑143 (MQ=255)                                              tGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAAc                                                                                             >  2:78560/1‑143 (MQ=255)                                                  ggtATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATTAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGc                                                                                         <  1:51663/141‑1 (MQ=255)                                                   gtATGCTGGACAGCGGTGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCg                                                                                        <  2:215841/142‑1 (MQ=255)                                                                cGATGGGCAGTCTTATCTGCGGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATATGTCg                                                                           <  2:141455/143‑1 (MQ=255)                                                                 gATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATATGTCGc                                                                          >  1:669874/1‑143 (MQ=255)                                                                       cAGTTGTGTCTGCGGGAAGCCAGTACCTCACCGGGGAGGACCAGCCACAGCCTGGTGCCGATGGCGGCATGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATATGTCGCAGgctg                                                                    <  2:268468/143‑1 (MQ=255)                                                                        aGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGACACATTCGCGAGGCATGAGCTCACTGCGGCTTTTGTTACGAATTCTGGAACTGGCGGACTAATATGTCGCAGgctgc                                                                   >  2:766544/1‑143 (MQ=255)                                                                              aTCTGCTGGGAGCCCATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATATGTCGCAGGCTGCTCTGaa                                                             <  1:104567/143‑1 (MQ=255)                                                                              aTCCGCTGGAAGCCAACACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATTGCGGCACGTCAGGCAGGTATGAGCTTCGCGCAGCTGGTAGTACGAATTCTGGAACTGGCGGACTAATATGTCGCAGGCTGCTCTGaa                                                             <  1:308132/143‑1 (MQ=255)                                                                                 tgccgGACGCCAATTCCTCATCGGGGATGCCCGGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATATGTCGCAGGCTGCTCTGAacac                                                          <  2:620801/143‑1 (MQ=255)                                                                                  gctgGAAGCCAATACCTCACCGGGTATGACCATCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAAAATGTCGCAGGCTGCGCTGAACAcg                                                         >  2:412596/1‑143 (MQ=255)                                                                                      gAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCATCTCGCAGTTGGTAGTACGAATCCTGGAACTGGCGGACTAATATGTCGCAGGGAGCACTGAACACGCGaa                                                     >  2:292733/1‑143 (MQ=255)                                                                                           cAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTcaggctgtggctggtcatacccggtgaggtattggcttccagcagataaaactgtccatcg                                                                              >  2:561278‑M2/1‑52 (MQ=255)                                                                                           cAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATATGTCGCAGGCTGCTCTGAACACGCGAAACAGc                                                >  1:488290/1‑143 (MQ=255)                                                                                           cAATACCTCACCGGGAATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTcaggctgtggctggtcatacccggtgaggtattggcttccagcagataaaactgtccatcg                                                                              <  1:561278‑M2/113‑62 (MQ=255)                                                                                                 cTCGCCGGGTATGATCAGCCAGAGCCTGGTGCCGATGGCGGGACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATATGTCGCAGGCTGCTCTGAACACGCGAAACAGCgaagaa                                          <  2:420329/143‑1 (MQ=255)                                                                                                 cTCACCGGGTATGACCAGCCACGGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATATGTCGCAGGCTGCTCTGAACACGCGAAACAGCgaagaa                                          >  1:477307/1‑143 (MQ=255)                                                                                                   cACGGGGTATGACCCGCCACTGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTGCGAATTCTGGAACTGGCGGACTAATATGTCGCAGGCTGCTCTGAACACGCGAAACAGCGAagaaga                                        <  2:534943/143‑1 (MQ=255)                                                                                                   cACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTGTCGCAGTGGGTAGTACGAATTCTGGAACTGGCGGACTGACACGTCGCAGGCTGCTCTGAACACGCGAAACGGCGAagaaga                                        >  1:111090/1‑143 (MQ=255)                                                                                                   cACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATATGTCGCAGGCTGCTCTGAACACGCGAAACAGCGAagaaga                                        <  1:719830/143‑1 (MQ=255)                                                                                                         gTATGACCAGCCACAGCCTGGTGCCGATGGCGGCAC‑aggctgtggctggtcatacccggtgaggtattggcttccagcagataaaactgtccatcgctgtcccgcataacgtccatccctccccatccgttgcaccctaccg                                  <  1:390758‑M2/143‑107 (MQ=255)                                                                                                               ccAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATATGTCGCAGGCTGCTCTGAACACGCGAAACAGCGAAGAAGAGGTTTCTTCTcg                            <  1:78560/143‑1 (MQ=255)                                                                                                                  gccgcggCCTGGTGCCGGGGGCGGCACGTAGGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATATGGCGCAGGCTGCTCTGAACACGCGAGACAGCGAAGAAGAGGTTTCTTCTcgccg                         <  2:1800/137‑1 (MQ=255)                                                                                                                  gCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGGATGAGCTTCGCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATATGTCGCAGGCTGCTCTGAACACGCGAAACAGCGAAGAAGAGGTTTCTTCTcgccg                         <  1:91820/143‑1 (MQ=255)                                                                                                                     acaGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATATGTCGCAGGCTGCTCTGAACACGCGAAACAGCGAAGAAGAGGTTTCTTCTCGCCGCaa                      >  2:365951/1‑143 (MQ=255)                                                                                                                         ccTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTGCGAATTCTGGAACTGGCGGACTAATATGTCGCAGGCTGCTCTGAACACGCGAAACAGCGAAGAAGAGGTTTGTTCTCGCCGCaataat                  >  1:236301/1‑143 (MQ=255)                                                                                                                         ccTGGTGCCGATAGCGGCACGTcaggctgtggctggtcatacccggtgaggtattggcttccagcagataaaaatgtccatcgctgtccagcataacgtcaatacgtccacatcctttgcaacctaacgtcgtccatgcttac                  <  1:36466‑M2/143‑122 (MQ=255)                                                                                                                                       cggcACGTCAGGCAGGTATGAGCTTCTCGCCGTTGGTAGTACGAATTCTGGAACTGGCGGACTTATATGTCGCAGGCTGCTCTGAACACGCGCAACAGCGAAGAAGAGGTTTCTTCTCGCCGCAATCATGGAACGCGTCTGGc    >  1:94856/1‑143 (MQ=255)                                                                                                                                        ggggcGTCAGGCAGGTATGTGCTTCTCGCAGGTGGTAGGACGAATTCTGGAACTGGCGGACTAATATGTCGCAGGCTGCTCTGAACACGCGAAACAGCGAAGAAGAGGTTTCTTCTCGCCGCAATAATGGAACGCGTCTGGCg   <  2:671560/139‑1 (MQ=255)                                                                                                                                        ggcACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGGCTAATATGTCGCAGGCTGCTCTGAACACGCGAAACAGCGAAGAAGAGGTTTCTTCTCGCCGCCATAGTGAAGAGCGTCTGGCg   >  2:44822/1‑143 (MQ=255)                                                                                                                                         ggaCGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGCACTGGCGGACTAATATGTCGCAGGCTGCGCTGAACACGCGAAACAGCGAAGAAGAGGTTTCTTCTCGCCGCAATAATGGAACGCGTCTGGCgg  <  2:67463/141‑1 (MQ=255)                                                                                                                                              |                                                                                                                                          GCTGAAAGCATGGACGACGTTAGGTTGCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATATGTCGCAGGCTGCTCTGAACACGCGAAACAGCGAAGAAGAGGTTTCTTCTCGCCGCAATAATGGAACGCGTCTGGCGG  >  NC_000913/102955‑103233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.