New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1333674 =	32 (0.960)	3 (0.090)	3/252	NT	8.8%	intergenic (+29/‑181)	topA/cysB	DNA topoisomerase 1/DNA‑binding transcriptional dual regulator CysB
	?	NC_000913	1333698 =	32 (1.010)					intergenic (+53/‑157)	topA/cysB	DNA topoisomerase 1/DNA‑binding transcriptional dual regulator CysB

TTTCGTCACACCTGGCGGGTGACTAATACGATTTAATAATAAAAAAGGTGCTAACTATAACCACTATATCATTTATAGCCTTAGTGTATAGGTGTGAAGAAAAAATAATATGCAATAAAAAAGGGCCGCTTTCGCGACCCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1333816‑1333674 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctttTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTA  >  NC_000913/1333698‑1333839                                                                                                                                                                                                                                                                                               TTTCGTCACACCTGGCGGGTGACTAATACGATTTAATAATAAAAAAGGTGCTAACTATAACCACTATATCATTTATAGCCTTAGTGTATAGGTGTGAAGAAAAAATAATATGCAATAAAAAAGGGCCGCTTTCGCGACCCTTT                                                                                                                                                <  1:391651/143‑1                                                                       ATTTATAGCCTTAGTGTATAGGTGTGAAGAAAAAATAATATGCAATAAAAAAGGGCCGCTTTCGCGACCCTTTTTTATTGCATATTATTTTTTCTTCAAACCTATACACTAAGGCTATAAATGATATAGTGATCATAATTAGC                                                                          >  1:602761/1‑143                                                                                                            ATATGCAATAAAAAAGGGCCGCTTTCGCGACCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATCATTAAATCGTATTAGTCATCAGCCA                                     >  2:58073/1‑143                                                                                                                GCAATAAAAAAGGGCCGCTTTCGCGACCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTG                                 >  1:143327/1‑143                                                                                                                                            CTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGT     >  1:110687/1‑143                                                                                                                                               TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTA  >  1:57034/1‑143                                                                                                                                                                                                                                                                                               TTTCGTCACACCTGGCGGGTGACTAATACGATTTAATAATAAAAAAGGTGCTAACTATAACCACTATATCATTTATAGCCTTAGTGTATAGGTGTGAAGAAAAAATAATATGCAATAAAAAAGGGCCGCTTTCGCGACCCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1333816‑1333674 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctttTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTA  >  NC_000913/1333698‑1333839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.