New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1333674 =	32 (0.960)	3 (0.090)	3/252	NT	8.8%	intergenic (+29/‑181)	topA/cysB	DNA topoisomerase 1/DNA‑binding transcriptional dual regulator CysB
	?	NC_000913	1333698 =	32 (1.010)					intergenic (+53/‑157)	topA/cysB	DNA topoisomerase 1/DNA‑binding transcriptional dual regulator CysB

TGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTA  >  NC_000913/1333564‑1333839                                                                                                                                         |                                                                                                                                              cacctggcgggtgactaatacgatttaataataaaaaaggtgctaactataaccactatatcatttatagccttagtgtataggtgtgaagaaaaaataatatgcaataaaAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGc                                                                                                                                        >  1:143327‑M1/112‑143 (MQ=255)     tggctgatgactaatacgatttaatgataaaaaaggtgctaactataaccactatatcatttatagccttagtgtataggtgtgaagaaaaaataatatgcaataaaAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCatat                                                                                                                                    >  2:58073‑M1/108‑143 (MQ=255)          ggAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTAtttt                                                                                                                              <  1:564561/143‑1 (MQ=255)           gAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTAttttt                                                                                                                             >  2:184425/1‑143 (MQ=255)               aaGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTttctt                                                                                                                         <  2:276470/143‑1 (MQ=255)                      aaaGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCt                                                                                                                  <  1:424199/143‑1 (MQ=255)                      aaaGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGAAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCt                                                                                                                  <  2:511179/143‑1 (MQ=255)                          gCGACTGGGTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAGAAAAATAACCTTTACTTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCtata                                                                                                               <  2:531710/143‑1 (MQ=255)                              ctggctggTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCCCACCTCTACACTa                                                                                                          >  2:27916/1‑143 (MQ=255)                                 gctggTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAgg                                                                                                       >  1:420248/1‑143 (MQ=255)                                 gctggTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAgg                                                                                                       >  1:60308/1‑143 (MQ=255)                                   tggTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAAGCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCt                                                                                                     <  1:611280/143‑1 (MQ=255)                                   tggTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCt                                                                                                     >  2:273791/1‑143 (MQ=255)                                          gctaattatgatcactatatcatttatagccttagtgtataggtttgaagaaaaaataatatgcaataaaAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAAt                                                                                               >  1:602761‑M1/71‑143 (MQ=255)                                          cATTTTTTGTTGATGGCAAATTGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATg                                                                                              <  2:123171/143‑1 (MQ=255)                                                  gTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTGTAAATGATATAGTg                                                                                      >  1:560671/1‑143 (MQ=255)                                                     gATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGtt                                                                                   <  1:57141/143‑1 (MQ=255)                                                     gATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGtt                                                                                   <  2:298832/143‑1 (MQ=255)                                                        ggCAAACGCGTTGAAGGAA‑CACAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTCTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTtata                                                                                <  1:31521/143‑1 (MQ=255)                                                          cAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTGTTTGATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAg                                                                               <  2:318320/143‑1 (MQ=255)                                                           aaaTGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGtt                                                                             <  1:105535/143‑1 (MQ=255)                                                           aaaTGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGtt                                                                             <  2:321676/143‑1 (MQ=255)                                                                atttatagccttagtgtataggtgtgaagaaaaaataatatgcaataaaaaagggccgctttcgcgaccctttTTTATTGCATATTATTTTTTCTTCAAACCTATACACTAAGGCTATAAATGATATAGTGATCATAATTAGc                                                                          >  1:602761‑M2/74‑143 (MQ=255)                                                                    gAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATATTGGCTATCGTTAGAACAttt                                                                    >  2:338042/1‑143 (MQ=255)                                                                         aa‑aaacaTCACCTTTAATTCTCTCACCTTTTTATAAACAAATGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTCAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTttat                                                               <  1:264267/143‑1 (MQ=255)                                                                            aaaaaTAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTttatta                                                             >  2:364802/1‑143 (MQ=255)                                                                                     cTTTAATTCTGTCATGTTTTTATAAACAAAGGGTCGCGAAAGCGGCTCTT‑TTTTATTTTATATTATTTTTTTTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGt                                                    <  1:593939/143‑1 (MQ=255)                                                                                     cTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATCGTTAGCACCTTTTttgtttttatagcac                                                    >  1:474975/1‑137 (MQ=255)                                                                                      tttAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTa                                                   >  2:571096/1‑143 (MQ=255)                                                                                             cTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCa                                            <  1:419804/143‑1 (MQ=255)                                                                                                tCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATGGCATAATATTTTTTCTGCAGACCTATACGCTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCGTTTTTGTAATGAAATCGTATTCGTGAcac                                         >  2:590746/1‑141 (MQ=255)                                                                                                     atatgcaataaaaaagggccgctttcgcgaccctttTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATCATTAAATCGTATTAGTCATCAGCCa                                     >  2:58073‑M2/37‑143 (MQ=255)                                                                                                         gcaataaaaaagggccgctttcgcgaccctttTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGgtg                                 >  1:143327‑M2/33‑143 (MQ=255)                                                                                                               cAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTCAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCCGGCGTGCCGaa                          >  2:337685/1‑143 (MQ=255)                                                                                                                AAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGaaa                         <  1:391651‑M1/143‑1 (MQ=255)                                                                                                                         cgAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACATCTATACACTTACGCAACAAAAGATACTCTATTTATATTTAGCACCTTGTTTATTTTTAAATCGTATTAGTCACCCGCCAGGTGTGACGGAAAAACGCTGt                >  2:640335/1‑143 (MQ=255)                                                                                                                         cgAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAATCACTCGCCAGGTGTGACGAAAAAACGATGt                >  2:266280/1‑143 (MQ=255)                                                                                                                          gAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGtt               <  1:571096/143‑1 (MQ=255)                                                                                                                          gAAAGCGGCCCTT‑TTTTATTGCATATAATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGtt               >  2:335634/1‑143 (MQ=255)                                                                                                                                ggCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATg         >  1:268924/1‑143 (MQ=255)                                                                                                                                     ctttTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGt     >  1:110687‑M2/5‑143 (MQ=255)                                                                                                                                        tTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTa  >  1:57034‑M2/2‑143 (MQ=255)                                                                                                                                         |                                                                                                                                              TGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTA  >  NC_000913/1333564‑1333839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.