New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1333674 =	32 (0.960)	3 (0.090)	3/252	NT	8.8%	intergenic (+29/‑181)	topA/cysB	DNA topoisomerase 1/DNA‑binding transcriptional dual regulator CysB
	?	NC_000913	1333698 =	32 (1.010)					intergenic (+53/‑157)	topA/cysB	DNA topoisomerase 1/DNA‑binding transcriptional dual regulator CysB

TTCGCTTTAGCCGTAAAACCAAACAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAA  >  NC_000913/1333533‑1333816                                                                                                                                               |                                                                                                                                                tagacgccatcagaacatcgttttttcgtcacacctggcgggtgactaatacgatttaataataaaaaaggtgctaactataaccactatatcatttatagccttagtgtataggtgtgaagaaaaaataatatgcaataaaa                                                                                                                                                 >  1:57034‑M1/143‑143 (MQ=255)  tCGCTTTAGCCGTAAAACCAAACAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACaaa                                                                                                                                               >  2:35009/1‑143 (MQ=255)    acgccatcagaacatcgttttttcgtcacacctggcgggtgactaatacgatttaataataaaaaaggtgctaactataaccactatatcatttatagccttagtgtataggtgtgaagaaaaaataatatgcaataaaAAAg                                                                                                                                              >  1:110687‑M1/140‑143 (MQ=255)      tttAGCCGTAAAACCAAACAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAgggc                                                                                                                                           >  2:539780/1‑142 (MQ=255)              tAAAACCAAACAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAg                                                                                                                                   >  2:105535/1‑143 (MQ=255)                 aaCCAAACAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCgg                                                                                                                                >  1:321676/1‑143 (MQ=255)                     aaaCAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCt                                                                                                                            >  2:57141/1‑143 (MQ=255)                     aaaCAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGAGAATGGGTTGAAGGAA‑AAAAATAACATGTAATTATGATAGGTTTTGTTAAACGAAGGAGCGCGAACGGGGccag                                                                                                                            >  2:290232/1‑141 (MQ=255)                                cacctggcgggtgactaatacgatttaataataaaaaaggtgctaactataaccactatatcatttatagccttagtgtataggtgtgaagaaaaaataatatgcaataaaAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGc                                                                                                                 >  1:143327‑M1/112‑143 (MQ=255)                                    tggctgatgactaatacgatttaatgataaaaaaggtgctaactataaccactatatcatttatagccttagtgtataggtgtgaagaaaaaataatatgcaataaaAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCatat                                                                                                             >  2:58073‑M1/108‑143 (MQ=255)                                         ggAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTAtttt                                                                                                       <  1:564561/143‑1 (MQ=255)                                          gAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTAttttt                                                                                                      >  2:184425/1‑143 (MQ=255)                                              aaGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTttctt                                                                                                  <  2:276470/143‑1 (MQ=255)                                                     aaaGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCt                                                                                           <  1:424199/143‑1 (MQ=255)                                                     aaaGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGAAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCt                                                                                           <  2:511179/143‑1 (MQ=255)                                                         gCGACTGGGTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAGAAAAATAACCTTTACTTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCtata                                                                                        <  2:531710/143‑1 (MQ=255)                                                             ctggctggTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCCCACCTCTACACTa                                                                                   >  2:27916/1‑143 (MQ=255)                                                                gctggTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAgg                                                                                >  1:420248/1‑143 (MQ=255)                                                                gctggTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAgg                                                                                >  1:60308/1‑143 (MQ=255)                                                                  tggTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAAGCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCt                                                                              <  1:611280/143‑1 (MQ=255)                                                                  tggTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCt                                                                              >  2:273791/1‑143 (MQ=255)                                                                         gctaattatgatcactatatcatttatagccttagtgtataggtttgaagaaaaaataatatgcaataaaAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAAt                                                                        >  1:602761‑M1/71‑143 (MQ=255)                                                                         cATTTTTTGTTGATGGCAAATTGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATg                                                                       <  2:123171/143‑1 (MQ=255)                                                                                 gTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTGTAAATGATATAGTg                                                               >  1:560671/1‑143 (MQ=255)                                                                                    gATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGtt                                                            <  1:57141/143‑1 (MQ=255)                                                                                    gATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGtt                                                            <  2:298832/143‑1 (MQ=255)                                                                                       ggCAAACGCGTTGAAGGAA‑CACAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTCTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTtata                                                         <  1:31521/143‑1 (MQ=255)                                                                                         cAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTGTTTGATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAg                                                        <  2:318320/143‑1 (MQ=255)                                                                                          aaaTGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGtt                                                      <  1:105535/143‑1 (MQ=255)                                                                                          aaaTGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGtt                                                      <  2:321676/143‑1 (MQ=255)                                                                                                   gAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATATTGGCTATCGTTAGAACAttt                                             >  2:338042/1‑143 (MQ=255)                                                                                                        aa‑aaacaTCACCTTTAATTCTCTCACCTTTTTATAAACAAATGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTCAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTttat                                        <  1:264267/143‑1 (MQ=255)                                                                                                           aaaaaTAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTttatta                                      >  2:364802/1‑143 (MQ=255)                                                                                                                    cTTTAATTCTGTCATGTTTTTATAAACAAAGGGTCGCGAAAGCGGCTCTT‑TTTTATTTTATATTATTTTTTTTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGt                             <  1:593939/143‑1 (MQ=255)                                                                                                                    cTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATCGTTAGCACCTTTTttgtttttatagcac                             >  1:474975/1‑137 (MQ=255)                                                                                                                     tttAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTa                            >  2:571096/1‑143 (MQ=255)                                                                                                                            cTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCa                     <  1:419804/143‑1 (MQ=255)                                                                                                                               tCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATGGCATAATATTTTTTCTGCAGACCTATACGCTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCGTTTTTGTAATGAAATCGTATTCGTGAcac                  >  2:590746/1‑141 (MQ=255)                                                                                                                                              cAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTCAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCCGGCGTGCCGaa   >  2:337685/1‑143 (MQ=255)                                                                                                                                               AAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGaaa  <  1:391651‑M1/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                TTCGCTTTAGCCGTAAAACCAAACAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA‑AAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTT‑TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAA  >  NC_000913/1333533‑1333816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.