New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1437105 =	84 (2.530)	9 (0.270)	8/262	NT	15.3%	intergenic (‑212/‑16)	ompN/micC	outer membrane porin N/small regulatory RNA MicC
	?	NC_000913	= 1455347	16 (0.490)					coding (184/747 nt)	paaC	phenylacetyl‑CoA 1,2‑epoxidase, structural subunit

CCAATTCTAAAAAAAAAGCCCGGACGACTGTTCGGGCTTGTCTTTTTATATGTTGGAAAATCAGTGGCAATGCAATGGCCCAACAGAAAATAAAATCTGTGACAATAAAGGCATATAACCCGCGCAGAATAACGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1437239‑1437105 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCTCCCGCTAATTCAGCGGCATACGATAAGAAGTTGCGTGCCTGACCTAATAAATCGAGGCCAATGTTTGCCAGTGCGAGATCGATTTCCAGTTCCGGTGCGTGACCGCACCATTCACCCAACCGCTGGGAGAGCACCAGGCA  <  NC_000913/1455347‑1455206                                                                                                                                                                                                                                                                                       CCAATTCTAAAAAAAAAGCCCGGACGACTGTTCGGGCTTGTCTTTTTATATGTTGGAAAATCAGTGGCAATGCAATGGCCCAACAGAAAATAAAATCTGTGACAATAAAGGCATATAACCCGCGCAGAATAACGTCTCCCGCT                                                                                                                                        >  2:29291/1‑143   AATTCTAAAAAAAAAGCCCGGACGACTGTTCGGGCTTGTCTTTTTATATGTTGGAAAATCAGTGGCACTGCAAGGGCCCAACAGAAAATAAAATCTGTGACAAGAAAGGCACATAACCCGCGCAGACTAACGCCCCCCGCgca                                                                                                                                      >  1:412690/1‑140             acatAGCCCGGCCGACTGTTCGGGCTTGTCTTTTTATATGTTGGAAAATCAGTGGCAATGCAAGGGCCCAACAGAAAATAAAATCTGTGACAATAAAGGCATATAACCCGCGCAGAATAACGTCTCCCGCTAATTCAGCGGCA                                                                                                                            <  1:67663/139‑1                                          cgcTTTATATGTTGGAAAATCAGTGGCAATGCAATGGCCCAACAGAAAATAAAATCTGTGACAAGAAAGGCATATAACCCGCGCAGAATAACGTCTCCCGCTAATTCAGCGGCATACGATAAGAAGTTGCGTGCCTGACCTAA                                                                                               <  2:478131/140‑1                                                ATATGTTGGAAAATCAGTGGCAATGCAATGGCCCAACAGAAAATAAAATCTGTGACAATAAAGGCATATAACCCGCGCAGAATAACGTCTCCCGCTAATTCAGCGGCATACGATAAGCAGTTGAGTGCCTGACCCAATAAAga                                                                                         >  2:587926/1‑141                                                                GTGGCAATGCAATGGCCCAACAGAAAATAAAATCTGTGACAATAAAGGCATATAACCCGCGCAGAATAACGTCTCCCGCTAATTCAGCGGCATACGATAAGAAGTTGCGTGCCTGACATAAGAAAGCGAGGCCGATGTTTGCC                                                                         >  2:257201/1‑143                                                                                            AAAATCTGTGACAATAAAGGCATATAACCCGCGCAGAATAACGTCTCCCGCTAATTCAGCGGCATCCGATAAGAAGTTGCGTGCCTGACCTAATAAATAGAGGCCAAAGTTTGCCACGGCGGGCTCGCTATCCAGTTCCGGTG                                             >  2:108818/1‑143                                                                                                      ACAATAAAGGCATATAACCCGCGCAGAATAGCGTCTCCCGCTAATTCAGCGGCATACGATAAGAAGTTGCGTGCCTGACCTAATAAATCGAGGCCAATGTTTGCCAGTGCGAGATCGATTTCCAGTTCCGGTGCGTGACCGCA                                   <  1:264196/143‑1                                                                                                                   ATAACCCGCGCAGAATAACGTCTCCCGCTAATTCAGCGGCATACGATAAGAAGTTGCGTGCCTGACCTAATAAATCGAGGCCAATGTTTGCCAGTGCGAGATCGATTTCCAGTTCCGGTGCGTGACCGCACCATTCACCCAAC                      <  1:235400/143‑1                                                                                                                                       TCTCCCGCTAATTCAGCGGCATACGATAAGAAGTTGCGTGCCTGACCTAATAAATCGAGGCCAATGTTTGCCAGTGCGAGATCGCTTTCCAGTTCCGGGGCGTGACCGCACCATGCACCCAGACGCTGGGAGAGCAGCAGGCA  >  2:401959/1‑143                                                                                                                                                                                                                                                                                       CCAATTCTAAAAAAAAAGCCCGGACGACTGTTCGGGCTTGTCTTTTTATATGTTGGAAAATCAGTGGCAATGCAATGGCCCAACAGAAAATAAAATCTGTGACAATAAAGGCATATAACCCGCGCAGAATAACGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1437239‑1437105 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCTCCCGCTAATTCAGCGGCATACGATAAGAAGTTGCGTGCCTGACCTAATAAATCGAGGCCAATGTTTGCCAGTGCGAGATCGATTTCCAGTTCCGGTGCGTGACCGCACCATTCACCCAACCGCTGGGAGAGCACCAGGCA  <  NC_000913/1455347‑1455206

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.