New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1437105 =	84 (2.530)	9 (0.270)	8/262	NT	15.3%	intergenic (‑212/‑16)	ompN/micC	outer membrane porin N/small regulatory RNA MicC
	?	NC_000913	= 1455347	16 (0.490)					coding (184/747 nt)	paaC	phenylacetyl‑CoA 1,2‑epoxidase, structural subunit

TGCCTGGTGCTCTCCCAGCGGTTGGGTGAATGGTGCGGTCACGCACCGGAACTGGAAATCGATCTCGCACTGGCAAACATTGGCCTCGATTTATTAGGTCAGGCACGCAACTTCTTATCGTATGCCGCTGAATTAGCGGGAGAAGGCGATGAAGATACCCTGGCCTTCACCCGAGACGAGCGCCAGTTCAGCAACTTATTGTTGGTTGAACAACCAAACGGCAATTTTGCCGACACCATTGCACGCCAGTATTTCATCGATGCATGGCATGTGGCGCTCTTTAC  >  NC_000913/1455206‑1455489                                                                                                                                              |                                                                                                                                               tGCCTGCTGCTCTCCCAGCGTCTGGGTGCATGGTGCGGTCACGCCCCGGAACTGGAAAGCGATCTCGCACTGGCAAACATTGGCCTCGATTTATTAGGTCAGGCACGCAACTTCTTATCGTATGCCGCTGAATTAGCGGGAGa                                                                                                                                               >  2:401959‑M2/1‑142 (MQ=255)       gTGCTCTCCCAGCGGTTGGGTGAATGGTGCGGTCACGCACCGGAACTGGAAATCGATCCCGCACTGGCAAACATTGGCCTCGAATTATTAGGTCAGGCACGCCACTTCTTATCGTAGGCCGCTGAAGTAGCGGGAGAAGGCGa                                                                                                                                         >  2:76666/1‑143 (MQ=255)           tctcCCAGCGGTTGGGTGAATGGTGCGGTCACGCACCGGAACTGGAAATCGATCTCGCACTGGCAAACATTGGCCTCGATTTATTAGGTCAGGCACGCAACTTCTTATCGTATGCCGCTGAATTAGCGGGAGAAGGCGATGaa                                                                                                                                     >  1:234333/1‑143 (MQ=255)                 aGCGGTTGGGTGAATGGTGCGGTCACGCACCGGAACTGGAAATCGATCTCGCACTGGCAAACATTGGCCTCGATTTATTAGGTCAGGCACGCCACTTCTTAACGTATGCCCCTGAAGTAGCGGGAGAAGGCGAAGGAGATAcc                                                                                                                               >  2:592827/1‑143 (MQ=255)                    ggTTGGGTGTATGGTGCGTTCACGCACCGGTACTTGACATCGATCTCGCACTTGCAACCATTGGCCTCGATTTATTAGGTCAGGCACGCAACTTCTTATCGTATGCCGCTGAATTAGCGGTAGAAGGCGATGAAGATACCCTg                                                                                                                            <  2:42550/143‑1 (MQ=255)                     gTTGGGTGAATGGTGCGGTCACGCACCGGAACTGGAAATCGATCTCGCACTGGCAAACATTGGCCTCGATTTATTAGGTCAGGCACGCAACTTCTTATCGTATGCCGCTGAATTAGCGGGAGacgttattctgcgcgggttat                                                                                                                           <  1:235400‑M2/143‑22 (MQ=255)                      gtGGGTGCCTCGTGCCGGCACGCGCCGGAGCTGGCACTCGATCGCGCACTGGCAAACATTGGCCTCGATTTATTAGGGCAGGCACGCAACTTCTTATCGTATGCCGCTGAATTAGCGGGAGAAGGCGATGAAGATACCCTGGc                                                                                                                          <  2:79862/142‑1 (MQ=255)                          gTGAATGGTGCGGTCACGCACCGGAACTGGAAATCGATCTCGCACTGGCAAACATTGGACTCGATTTATTAGGTCAGGCACGCAACTTCTTATCGTATGCCGCTTGATTAGCGGGAGAAGGCGATGAAGATACCCTGGCCATc                                                                                                                      >  2:207879/1‑143 (MQ=255)                                  tGCGGTCACGCACCGGAACTGGAAATCGATCTCGCACTGGCAAACATTGGCCTCGATTTATTAGGTCAGGCACGCAACTTCTTATCGTATGCCGCTGAATTAGCGGGAGacgctattctgcgcgggttatatgcctttattgt                                                                                                              <  1:264196‑M2/143‑35 (MQ=255)                                            cACCGGAACTGGATAGCGAGCCCGCCGTGGCAAACTTTGGCCTCTATTTATTAGGTCAGGCACGCAACTTCTTATCGGATGCCGCTGAATTAGCGGGAGacgttattctgcgcgggttatatgcctttattgtcacagatttt                                                                                                    >  2:108818‑M2/1‑99 (MQ=255)                                                               tctcGCACTGGCAAACATTGGCCGCGAGTTATTAGGTCAGGCACGCAACTTCTTATCGTATGCCGCTGAATTAGCGGGAGAAGGCGATGAAGATACCCTGGCCTTCACCCGAGACGAGCGCCAGTTCAGCAACTTATTgttgg                                                                                 <  2:303251/143‑1 (MQ=255)                                                                       tGGCAAGCATTGGCCTCGATTCATGAGGTCAGGCACGCAGCTGCTTATCGTATGCCGCTGAATTAGCGGGAGAAGGCGATGAAGATACCCTGGCCTTCACCCGAGACGAGCGCCAGTTCAGCAACTTATTGTTGGTTGaacaa                                                                         <  2:325974/143‑1 (MQ=255)                                                                        ggCAAACATCGGCCTCGCTTTCTTATGTCAGGCACGCAACTTCTTATCGTATGCCGCTGAATTAGCGGGAGacgttattctgcgcgggttatatgcctttattgtcacagattttattttctgttgggccattgcattgccac                                                                        >  2:257201‑M2/1‑71 (MQ=255)                                                                            aaCATTGGCCTCGATTTATTAGGTCAGGCACGCAACTTCTTATCGTATGCCGCTGAATTAGCGGGAGAAGGCGAGGAAGATATGCTGGCCTTCACTCGAGACGAGCGCCAGTTCAGCAACCTATTGTTGGGTGGACAGACaaa                                                                    >  1:448189/1‑143 (MQ=255)                                                                                        tctttatTGGGTCAGGCACTCAACTGCTTATCGTATGCCGCTGAATTAGCGGGAGacgttattctgcgcgggttatatgcctttattgtcacagattttattttctgttgggccattgcattgccactgattttccaacatat                                                        >  2:587926‑M2/3‑55 (MQ=255)                                                                                        gATTTATTAGGTCAGGCACGCAACTTCTTATCGTATGCCGCTGCCTCCGCGTGCCAAGCCGACGAAGATACCCTGGCCTTCACCACAGCCGAGCGCCCCTTCACCAACGTCTGGTTGGTTCCACCACCAACCCGCCATTTTGc                                                        >  2:200719/1‑143 (MQ=255)                                                                                              ttaGGTCAGGCACGCAACTTCTTATCGTATGCCGCTGAATTAGCGGGAGacgttattctgcgcgggttatatgcctttcttgtcacagattttattttctgttgggccattgcattgccactgattttccaacatataaagcg                                                  <  2:478131‑M2/143‑95 (MQ=255)                                                                                                        cACGCAACTTCTTATCGTATGCCGCTGAATTAGCGGGAGAAGGCGATGAAGATACCCTGGCCTTCACCCGAGACGAGCGCCAGTTCAGCAACTTATTGTTGGTTGAACAACCAAACGGCAATTTTGCCGACACCATTGCACGc                                        >  1:633022/1‑143 (MQ=255)                                                                                                          cGCAACTTCTTATCGTATGCCGCTGAATTAGCGGGAGAAGGCGATGAAGATACCCTGGCCTTCACCCGAGACGAGCGCCAGTTCAGCAACTTATTGTTGGTTGAACAACCAAACGGCAATTTTGCCGACACCATTGCACGCCa                                      >  1:257273/1‑143 (MQ=255)                                                                                                                ttcttATCGTATGCCGCTGAATTAGCGGGAGAAGGCGATGAAGATACCCTGGCCTTCACCCGAGACGAGCGCCAGTTCAGCAACTTATTGTTGGTTGAACAACCAAACGGCAATTTTGCCGACACCATTGCACGACAGTAttg                                >  1:164298/1‑142 (MQ=255)                                                                                                                           tGCCGCTGAATTAGCGGGAGacgttattctgcgcgggttatatgcctttattgtcacagattttattttctgttgggcccttgcattgccactgattttccaacatataaaaagacaagcccgaacagtcggccgggctatgt                     <  1:67663‑M2/143‑124 (MQ=255)                                                                                                                             ccGCTGAATTAGCGGGAGAAGGCGATGAAGATACCCTGGCCTTCACCCGAGACGAGCGCCAGTTCAGCAACTTATTGTTGGTTGAACAACCAAACGGCAATTTTGCCGACACCATTGCACGCCAGTATTTCATCGATgcatgg                   >  1:369336/1‑143 (MQ=255)                                                                                                                               gCTGAATTAGCGGGAGAAGGCGATGAAGATACCCGGGCCTGCACCCGAGACGAGCGCCAGTTCAGCAACTTATTGTTGGTTGAACAACCAAACGGCAATTTTGCCGACACCATTGCACGCCAGTATTTCATCGATccatagca                 >  1:558947/1‑143 (MQ=255)                                                                                                                                     tgcgcggGGGgcgttagtctgcgcgggttatgtgcctttcttgtcacagattttattttctgttgggcccttgcagtgccactgattttccaacatataaaaagacaagcccgaacagtcgtccgggctttttttttagaatt           >  1:412690‑M2/4‑10 (MQ=255)                                                                                                                                       aGCGGGAGacgttattctgcgcgggttatatgcctttattgtcacagattttattttctgttgggccattgcattgccactgattttccaacatataaaaagacaagcccgaacagtcgtccgggctttttttttagaattgg         >  2:29291‑M2/1‑8 (MQ=255)                                                                                                                                        gCGGAAGAAGACGATGAAGACACCTTGGCCTCCACCCGAGACGAGCGCCAGTTCAGCAACTTATTGTTCGTTGAACAACCAAAAGGCAATTTTGCCGACACCATTGCACGCCAGTATTTCATCGATGCATGGCATGTGGCGct        <  1:242426/143‑1 (MQ=255)                                                                                                                                              gaAGGCGCCGCAGACGCCCTGGCCTTCACCCGAGACGAGCGCCCGGTCAGCAACTTAGTGTTGGTTGAACAACCAAACGGCAATTTTGCCGACACCATTGCACGCCAGTATTTCATCGATGCATGGCATGTGGCGCTCTTTAc  <  1:595574/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                               TGCCTGGTGCTCTCCCAGCGGTTGGGTGAATGGTGCGGTCACGCACCGGAACTGGAAATCGATCTCGCACTGGCAAACATTGGCCTCGATTTATTAGGTCAGGCACGCAACTTCTTATCGTATGCCGCTGAATTAGCGGGAGAAGGCGATGAAGATACCCTGGCCTTCACCCGAGACGAGCGCCAGTTCAGCAACTTATTGTTGGTTGAACAACCAAACGGCAATTTTGCCGACACCATTGCACGCCAGTATTTCATCGATGCATGGCATGTGGCGCTCTTTAC  >  NC_000913/1455206‑1455489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.