New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 3868326 | 45 (1.360) | 4 (0.130) | 4/250 | NT | 8.5% | coding (984/1248 nt) | yidR | DUF3748 domain‑containing galacturonate catabolism protein YidR |
? | NC_000913 | = 3868333 | 44 (1.400) | coding (977/1248 nt) | yidR | DUF3748 domain‑containing galacturonate catabolism protein YidR |
ACCTCGCCGCTTTGCGCATGGGCACAAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATAAGCCCGATGGTGGGTAAAGGTTAAAC > NC_000913/3868186‑3868465 | aCCTCGCCGCTTTGCGCATGGGCACAAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCga < 2:571533/143‑1 (MQ=255) cATGGGCACAAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGGTAAG‑CCACAGTTGc > 2:317306/1‑143 (MQ=255) cATGGGCACAAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTAACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGc > 2:271015/1‑143 (MQ=255) aTGGGCACAAGCAATTCGATTATGCAGCACAAAGCCCAACCAATACAAAATTTTTTTGTTGTTTAATGCAGACTGTATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGca < 1:302313/143‑1 (MQ=255) tGGGCACAAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGAATGAAAACCCGACTTGCTCTGTGCAATCTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACCGTTGcac > 2:138495/1‑143 (MQ=255) cacaAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATg < 1:568712/143‑1 (MQ=255) cacaAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATg < 1:129601/143‑1 (MQ=255) caAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGCTAAG‑CCGCAGTTGCACAATGcc > 1:407439/1‑143 (MQ=255) caAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGCTAAG‑CCACAGTTGCACAATGcc > 1:407444/1‑143 (MQ=255) cgCAATTTGATCAGCCGCCACAAGCCCCTAGCTTGCTCCTGCCGTATGCCAGTTAAATGCAGGCTCAATATCCGTTTTGTTATCGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGt < 2:246199/142‑1 (MQ=255) aTTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGCTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCTTGTGGCTCTTGACG‑CCACAGTTGCACAATGCCGTTATCAtctc > 1:273921/1‑143 (MQ=255) ttATCCAGCACAAAGCCCAACCCTTCTCCTGACGTCTGCCAGTTAACTGCAGACTGAACATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCg < 1:32037/143‑1 (MQ=255) ccAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCGCTGTGCCCAGATTAG‑TTTCAGCTGCCCCACGCCGTTCTCATCTCGCAtt > 1:89859/1‑143 (MQ=255) cAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTa > 1:244243/1‑143 (MQ=255) aGCACAAAGCCCAACCCTTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCATGTGGCGAAAAAAAAACA‑AATTGCACAATGCCGTTATCATCTCGCATTaa < 1:485727/143‑1 (MQ=255) cacaAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCttatctcgccac > 1:299684‑M1/1‑97 (MQ=255) cacaAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCttatctcgccac < 2:299684‑M1/109‑13 (MQ=255) cacaAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCAGTaaac > 2:588623/1‑142 (MQ=255) acaAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTaaaaa > 1:586420/1‑143 (MQ=255) aaaGCCCAACCACTCTCCTGACGGATGCCAGTTAAATGCAGACTGCATATCCGTTTTGTTATGGGTTAACTAGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAAcg > 1:184892/1‑143 (MQ=255) aaCCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑Ttg > 1:580067/1‑143 (MQ=255) cATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTAGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTgtgt > 1:377309/1‑143 (MQ=255) gcGGAGGCCAGTTAAATGCAGACGGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCGCGCTGTGAAGTCTCCAGATACG‑CCTTCGTTACGTGTTGTCTTTATTATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGa < 1:305587/142‑1 (MQ=255) cAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAgcg > 2:624552/1‑143 (MQ=255) gTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGCTTACAGCGCa > 2:512598/1‑143 (MQ=255) tAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCAcc < 1:82338/143‑1 (MQ=255) aaTGCAGACTGAATATCCGCTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGGGAT‑TTGTGTACCCTGCGGCTTGCCGAGCACCCa > 1:113684/1‑143 (MQ=255) cTGAAGATCCGTTTTGTTATGGGTTAACTGGCGCGGCGCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGcgcg < 2:205902/143‑1 (MQ=255) tgtatGCGTTTCGGTATGGGTTAACTGGCGCGGCTCGCCGCGCTGTGGCGAGATAAG‑CTACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGa < 2:580067/141‑1 (MQ=255) aaTATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCCCAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGCTTACAGCGCACCCAGTGgcggaggg > 1:148651/1‑138 (MQ=255) atatCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAACACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGGGGCGCGGGAc > 1:174997/1‑143 (MQ=255) tatCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACg > 1:634887/1‑143 (MQ=255) tCCGTTTTGTTATGGGTTCACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGGAGCCAGTGGCGCGGGGCGtt > 2:198217/1‑143 (MQ=255) tCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTGGAGCGCACCCAGTGGCGCGGGACGtt > 1:31183/1‑143 (MQ=255) cGTTTTGTTGCGGGCAACCTGTCGTGGCGCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGa < 1:545595/143‑1 (MQ=255) cGTTTTGTTATGGGTTACCTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAACAACGCGAT‑TTGTGTACCTTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGa < 2:142445/143‑1 (MQ=255) cGTTTTGTTATGGGTGAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCAGCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGa < 1:614333/143‑1 (MQ=255) cGTGTTGCTATGGGTTAACGGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGa < 1:489321/143‑1 (MQ=255) ttttGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGACCACAGCGCACCCAGAGGCGCGGGACCGTGAcc > 2:347019/1‑142 (MQ=255) ttATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAG‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAAcca > 1:260538/1‑142 (MQ=255) taggcgTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGAGAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAAcccc < 1:298291/138‑1 (MQ=255) ttAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAATAACTCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATaa < 1:588623/143‑1 (MQ=255) tAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATAAg < 1:371253/143‑1 (MQ=255) aCTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATAAGcc < 1:656466/143‑1 (MQ=255) aCTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATACCGTTGTCATCTCGCATTACAAA‑ACTATGTTTTGTAAATAGTAATTTACAGGCCACCCCGTGGCCCGCGGCGTTGACTAACCCCGGGCAAGcc > 2:639185/1‑143 (MQ=255) gcgcGGCTCGCCGCCCTGTGGCttatctcgccaca > 2:492791‑M1/1‑22 (MQ=255) gcgcGGCTCGCCGCCCTGTGGCttatctcgccaca < 1:492791‑M1/35‑14 (MQ=255) gcgcGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATAAGCCCGAt < 1:624552/143‑1 (MQ=255) cgGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATAAGCCCGAtggt > 1:112255/1‑143 (MQ=255) cgccCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATAAGCCCGATGGTGGGTAAAg < 1:156292/143‑1 (MQ=255) tgtgGCGAGATAAgccacagggcggcgagccgcgc > 2:492791‑M2/1‑13 (MQ=255) tgtgGCGAGATAAgccacagggcggcgagccgcgc < 1:492791‑M2/35‑23 (MQ=255) gtgGCGAGATAAgccacagggcggcgagccgcgccagttaacccataacaaaacggatattcagtctgcatttaactggcatccgtcaggagaatggttgggctttgtg < 2:299684‑M2/109‑98 (MQ=255) gtgGCGAGATAAgccacagggcggcgagccgcgccagttaacccataacaaaacggatattcagtctgcatttaactggcatccgtcaggagaatggttgggctttgtg > 1:299684‑M2/1‑12 (MQ=255) tgGCGAGATAAG‑CCACATTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATAAGCCCGATGGTGGGTAAAGGTTAAAc < 1:436950/143‑1 (MQ=255) | ACCTCGCCGCTTTGCGCATGGGCACAAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATAAGCCCGATGGTGGGTAAAGGTTAAAC > NC_000913/3868186‑3868465 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |