New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3868326	45 (1.360)	4 (0.130)	4/250	NT	8.5%	coding (984/1248 nt)	yidR	DUF3748 domain‑containing galacturonate catabolism protein YidR
	?	NC_000913	= 3868333	44 (1.400)					coding (977/1248 nt)	yidR	DUF3748 domain‑containing galacturonate catabolism protein YidR

CATGGGCACAAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATAAGCCCGATGGTGGGTAAAGGTTAAACGTCGCTGCAC  >  NC_000913/3868202‑3868475                                                                                                                                    |                                                                                                                                                 cATGGGCACAAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGGTAAG‑CCACAGTTGc                                                                                                                                      >  2:317306/1‑143 (MQ=255) cATGGGCACAAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTAACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGc                                                                                                                                      >  2:271015/1‑143 (MQ=255)  aTGGGCACAAGCAATTCGATTATGCAGCACAAAGCCCAACCAATACAAAATTTTTTTGTTGTTTAATGCAGACTGTATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGca                                                                                                                                     <  1:302313/143‑1 (MQ=255)   tGGGCACAAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGAATGAAAACCCGACTTGCTCTGTGCAATCTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACCGTTGcac                                                                                                                                    >  2:138495/1‑143 (MQ=255)       cacaAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATg                                                                                                                                <  1:568712/143‑1 (MQ=255)       cacaAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATg                                                                                                                                <  1:129601/143‑1 (MQ=255)         caAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGCTAAG‑CCGCAGTTGCACAATGcc                                                                                                                              >  1:407439/1‑143 (MQ=255)         caAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGCTAAG‑CCACAGTTGCACAATGcc                                                                                                                              >  1:407444/1‑143 (MQ=255)           cgCAATTTGATCAGCCGCCACAAGCCCCTAGCTTGCTCCTGCCGTATGCCAGTTAAATGCAGGCTCAATATCCGTTTTGTTATCGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGt                                                                                                                            <  2:246199/142‑1 (MQ=255)                    aTTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGCTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCTTGTGGCTCTTGACG‑CCACAGTTGCACAATGCCGTTATCAtctc                                                                                                                   >  1:273921/1‑143 (MQ=255)                     ttATCCAGCACAAAGCCCAACCCTTCTCCTGACGTCTGCCAGTTAACTGCAGACTGAACATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCg                                                                                                                  <  1:32037/143‑1 (MQ=255)                         ccAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCGCTGTGCCCAGATTAG‑TTTCAGCTGCCCCACGCCGTTCTCATCTCGCAtt                                                                                                              >  1:89859/1‑143 (MQ=255)                          cAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTa                                                                                                             >  1:244243/1‑143 (MQ=255)                           aGCACAAAGCCCAACCCTTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCATGTGGCGAAAAAAAAACA‑AATTGCACAATGCCGTTATCATCTCGCATTaa                                                                                                            <  1:485727/143‑1 (MQ=255)                             cacaAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCAGTaaac                                                                                                          >  2:588623/1‑142 (MQ=255)                              acaAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTaaaaa                                                                                                         >  1:586420/1‑143 (MQ=255)                                aaaGCCCAACCACTCTCCTGACGGATGCCAGTTAAATGCAGACTGCATATCCGTTTTGTTATGGGTTAACTAGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAAcg                                                                                                       >  1:184892/1‑143 (MQ=255)                                       aaCCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑Ttg                                                                                               >  1:580067/1‑143 (MQ=255)                                          cATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTAGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTgtgt                                                                                            >  1:377309/1‑143 (MQ=255)                                                    gcGGAGGCCAGTTAAATGCAGACGGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCGCGCTGTGAAGTCTCCAGATACG‑CCTTCGTTACGTGTTGTCTTTATTATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGa                                                                                  <  1:305587/142‑1 (MQ=255)                                                            cAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAgcg                                                                          >  2:624552/1‑143 (MQ=255)                                                              gTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGCTTACAGCGCa                                                                        >  2:512598/1‑143 (MQ=255)                                                                tAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCAcc                                                                      <  1:82338/143‑1 (MQ=255)                                                                  aaTGCAGACTGAATATCCGCTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGGGAT‑TTGTGTACCCTGCGGCTTGCCGAGCACCCa                                                                    >  1:113684/1‑143 (MQ=255)                                                                          cTGAAGATCCGTTTTGTTATGGGTTAACTGGCGCGGCGCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGcgcg                                                            <  2:205902/143‑1 (MQ=255)                                                                             tgtatGCGTTTCGGTATGGGTTAACTGGCGCGGCTCGCCGCGCTGTGGCGAGATAAG‑CTACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGa                                                         <  2:580067/141‑1 (MQ=255)                                                                             aaTATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCCCAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGCTTACAGCGCACCCAGTGgcggaggg                                                         >  1:148651/1‑138 (MQ=255)                                                                              atatCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAACACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGGGGCGCGGGAc                                                        >  1:174997/1‑143 (MQ=255)                                                                               tatCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACg                                                       >  1:634887/1‑143 (MQ=255)                                                                                 tCCGTTTTGTTATGGGTTCACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGGAGCCAGTGGCGCGGGGCGtt                                                     >  2:198217/1‑143 (MQ=255)                                                                                 tCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTGGAGCGCACCCAGTGGCGCGGGACGtt                                                     >  1:31183/1‑143 (MQ=255)                                                                                   cGTTTTGTTGCGGGCAACCTGTCGTGGCGCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGa                                                   <  1:545595/143‑1 (MQ=255)                                                                                   cGTTTTGTTATGGGTTACCTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAACAACGCGAT‑TTGTGTACCTTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGa                                                   <  2:142445/143‑1 (MQ=255)                                                                                   cGTTTTGTTATGGGTGAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCAGCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGa                                                   <  1:614333/143‑1 (MQ=255)                                                                                   cGTGTTGCTATGGGTTAACGGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGa                                                   <  1:489321/143‑1 (MQ=255)                                                                                     ttttGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGACCACAGCGCACCCAGAGGCGCGGGACCGTGAcc                                                 >  2:347019/1‑142 (MQ=255)                                                                                          ttATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAG‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAAcca                                            >  1:260538/1‑142 (MQ=255)                                                                                           taggcgTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGAGAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAAcccc                                           <  1:298291/138‑1 (MQ=255)                                                                                                 ttAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAATAACTCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATaa                                     <  1:588623/143‑1 (MQ=255)                                                                                                  tAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATAAg                                    <  1:371253/143‑1 (MQ=255)                                                                                                    aCTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATAAGcc                                  <  1:656466/143‑1 (MQ=255)                                                                                                    aCTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATACCGTTGTCATCTCGCATTACAAA‑ACTATGTTTTGTAAATAGTAATTTACAGGCCACCCCGTGGCCCGCGGCGTTGACTAACCCCGGGCAAGcc                                  >  2:639185/1‑143 (MQ=255)                                                                                                        gcgcGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATAAGCCCGAt                              <  1:624552/143‑1 (MQ=255)                                                                                                           cgGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATAAGCCCGAtggt                           >  1:112255/1‑143 (MQ=255)                                                                                                                   cgccCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATAAGCCCGATGGTGGGTAAAg                   <  1:156292/143‑1 (MQ=255)                                                                                                                        tgtgGCGAGATAAgccacagggcggcgagccgcgc                                                                                                                            >  2:492791‑M2/1‑13 (MQ=255)                                                                                                                        tgtgGCGAGATAAgccacagggcggcgagccgcgc                                                                                                                            <  1:492791‑M2/35‑23 (MQ=255)                                                                                                                         gtgGCGAGATAAgccacagggcggcgagccgcgccagttaacccataacaaaacggatattcagtctgcatttaactggcatccgtcaggagaatggttgggctttgtg                                                 <  2:299684‑M2/109‑98 (MQ=255)                                                                                                                         gtgGCGAGATAAgccacagggcggcgagccgcgccagttaacccataacaaaacggatattcagtctgcatttaactggcatccgtcaggagaatggttgggctttgtg                                                 >  1:299684‑M2/1‑12 (MQ=255)                                                                                                                          tgGCGAGATAAG‑CCACATTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATAAGCCCGATGGTGGGTAAAGGTTAAAc            <  1:436950/143‑1 (MQ=255)                                                                                                                               agaTAAG‑CCACGGTTGCACAAGGCCGTTATCATCTCGCATTGAAAACGGGAT‑TTGTGTACCCTGCGGAGTACGGCGCACGCGGTGGCGCGGGACGTTGACTAACCCCGGATAAGCCCGATGGTGGGTAAAGGTTAAACGTCGc       <  2:378670/143‑1 (MQ=255)                                                                                                                                   aaG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCTAGTGGCGCGGGACGTTGACTAACCCCGGATAAGCCCGATGGTGGGTAAAGGTTAAACGTCGCTGCa   <  1:35905/143‑1 (MQ=255)                                                                                                                                    aG‑CGACATTGGCACATTGCCGTTATCATCGCGCAGTAAAAACGCGAT‑GTGTTTACCCTGCGGATTACAGCGCACCCAGTGGCGCTGTACGTTGACTAACCCCGCATAAGCCCGATGGTGGGTAAAGGTTAAACGTCGCTGCac  <  2:313794/143‑1 (MQ=255)                                                                                                                                    |                                                                                                                                                 CATGGGCACAAGCAATTCGATTATCCAGCACAAAGCCCAACCATTCTCCTGACGGATGCCAGTTAAATGCAGACTGAATATCCGTTTTGTTATGGGTTAACTGGCGCGGCTCGCCGCCCTGTGGCGAGATAAG‑CCACAGTTGCACAATGCCGTTATCATCTCGCATTAAAAACGCGAT‑TTGTGTACCCTGCGGATTACAGCGCACCCAGTGGCGCGGGACGTTGACTAACCCCGGATAAGCCCGATGGTGGGTAAAGGTTAAACGTCGCTGCAC  >  NC_000913/3868202‑3868475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.