New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3984240 =	NA (NA)	4 (0.060)	3/250	NT	NA	noncoding (20/34 nt)	other	REP287a
	?	NC_000913	3984302 =	NA (NA)					noncoding (23/36 nt)	other	REP287b

AAAATATCCACCACGCGCGCAGATTAAATCTGACTAAGCCGGCGCTATCGCTGAGATCTGCCTTTGCCGGATGCGATGCTGACGCATCTTATCCAGCCTACAGAACGCTGCAATTTATTGAATTTGCACGATCATGTAGGCCGGATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3984388‑3984240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggataagATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGCATTTCGGTCTGTAGCGGTACACCCATCGGA  >  NC_000913/3984302‑3984442                                                                                                                                                                                                                                                                                                    AAAATATCCACCACGCGCGCAGATTAAATCTGACTAAGCCGGCGCTATCGCTGAGCTCTGCCTATGCCGGATGCGATGCTGACGCATCTTATCCAGCCTACAGAACGCTGCAATTTATTGAATTTGCACGATCATGTAGGCCG                                                                                                                                                     <  1:474825/143‑1  AAATATCCACCACGCGCGCAGATTAAATCTGACTAAGCCGGCGCTATCGCTGAGATCTGCCTTTGCCGGATGCGATGCTGACGCATCTTATCCAGCCTACAGAACGCTGCAATTTATTGAATTTGCACGATCATGTAGGCCGG                                                                                                                                                    <  2:310260/143‑1      ATCCACCGCGCGCGCAGATTAAATCTGACTACGCCGGCGCTATCGCTGAGATCTGCCTTTGCCGGATGCGATGCTGACGCATCTTATCCAGCCTACAGACCGCTGCAATTTATTGAATTTGCACGATCATGTAGGCCGGATAA                                                                                                                                                <  1:1197310/143‑1      ATCCACCACGCGCGCAGATTAAATCGGACCAAGCCGGCGCTATCGCTGAGATCTGCCGTTGCCGGATGCGATGCTGACGCATCTTATCCAGCCTACAGAACGCTGCAATTTATTGAATTTGCACGATCATGTAGGCCGGATAA                                                                                                                                                <  1:121372/143‑1       TCCACCACGCGCGCAGATTAAATCTGACTAAGCCGGCGCTATCGCTGAGATCTGCCTTTGCCGGATGCGATGCTGACGCATCTTATCCAGCCTACAGAACGCTGCAATTTATTGAATTTGCACGATCATTTAGGCCGGATAAa                                                                                                                                               >  2:344069/1‑142                                                                                 GACGCATCTTATCCAGCCTACAGAACGCTGCAATTTATTGAATTTGCACGATCATGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCG                                                                     >  1:874438/1‑143                                                                                       TCTTATCCAGCCTACAGAACGCTGCAATTTATTGAATTTGCACGACCATGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTACTCTGCGCGCGCGGTGG                                                               >  2:186033/1‑143                                                                                                                                     tcTGTAGGGCGGATAAGTTTGGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGCATTTCGGTCTGTAGC                 <  2:5029/141‑1                                                                                                                                     ccTGTCGGCCGGAGAAGATGCGTCAGCATCGCATCCGGCAAAGGGAGATCTCAGCGATAGCGCCGGCTTAGTGAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGCATTTCGGTCTGTAGC                 <  2:844319/141‑1                                                                                                                                                   AAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGACGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGCATTTCGGTCTGTAGCGGTACCCCCATCGG   >  2:161571/1‑143                                                                                                                                                    AGATGCGTCAGCATCGCATCCGGCAAAGGAAGATCTCAACGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGCATTTCGGTCTGTAGCGGTACACCCATCGGA  >  1:54248/1‑143                                                                                                                                                                                                                                                                                                    AAAATATCCACCACGCGCGCAGATTAAATCTGACTAAGCCGGCGCTATCGCTGAGATCTGCCTTTGCCGGATGCGATGCTGACGCATCTTATCCAGCCTACAGAACGCTGCAATTTATTGAATTTGCACGATCATGTAGGCCGGATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3984388‑3984240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggataagATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGCATTTCGGTCTGTAGCGGTACACCCATCGGA  >  NC_000913/3984302‑3984442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.