mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.8% | 118.7 / 60.6 | 108 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 47 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3792764 | 102 (2.110) | 7 (0.160) | 7/260 | 4.4 | 7.0% | intergenic (‑213/+62) | kbl/htrL | 2‑amino‑3‑ketobutyrate CoA ligase/protein HtrL |
| ? | NC_000913 | = 3792768 | 91 (2.040) | intergenic (‑217/+58) | kbl/htrL | 2‑amino‑3‑ketobutyrate CoA ligase/protein HtrL | |||||
| * | ? | NC_000913 | = 3946670 | 94 (1.940) | 6 (0.130) | 6/270 | 5.0 | 6.2% | intergenic (+63/‑30) | rrlC/rrfC | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4040499 | NA (NA) | intergenic (+76/‑18) | rrlA/rrfA | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | = 228744 | 25 (0.520) | 6 (0.130) | 6/270 | 5.0 | 9.5% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 3946664 | 91 (1.960) | intergenic (+57/‑36) | rrlC/rrfC | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | 3943173 = | NA (NA) | 6 (0.130) | 6/276 | 5.1 | NA | noncoding (1366/1542 nt) | rrsC | 16S ribosomal RNA |
| ? | NC_000913 | 3943224 = | NA (NA) | noncoding (1417/1542 nt) | rrsC | 16S ribosomal RNA | |||||
| * | ? | NC_000913 | 225136 = | NA (NA) | 6 (0.130) | 6/276 | 5.1 | NA | noncoding (1366/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | NC_000913 | 225187 = | NA (NA) | noncoding (1417/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | NC_000913 | 1632779 = | 34 (0.700) | 7 (0.140) | 6/282 | 5.2 | 17.1% | intergenic (‑494/‑111) | ydfJ/ynfT | putative transporter YdfJ/Qin prophage; protein YnfT |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 4040481 | NA (NA) | 5 (0.110) | 5/270 | 5.4 | 23.5% | intergenic (+58/‑36) | rrlA/rrfA | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4040505 | 17 (0.350) | intergenic (+82/‑12) | rrlA/rrfA | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | = 228744 | 25 (0.520) | 5 (0.110) | 5/270 | 5.4 | 17.3% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4040481 | NA (NA) | intergenic (+58/‑36) | rrlA/rrfA | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | 3423665 = | NA (NA) | 6 (0.130) | 5/278 | 5.6 | 7.6% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA |
| ? | NC_000913 | = 4040683 | 74 (1.530) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis adaptor protein | |||||
| * | ? | NC_000913 | 4365125 = | 97 (2.000) | 6 (0.130) | 4/268 | 5.9 | 6.3% | coding (232/339 nt) | cutA | copper binding protein CutA |
| ? | NC_000913 | 4365142 = | 87 (1.890) | coding (215/339 nt) | cutA | copper binding protein CutA | |||||