New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3855060 =	37 (1.560)	4 (0.180)	4/250	NT	9.9%	coding (1139/1185 nt)	emrD	multidrug efflux pump EmrD
	?	NC_000913	3855100 =	38 (1.690)					coding (1179/1185 nt)	emrD	multidrug efflux pump EmrD

GTTTTATTCTTACTCCGCACCGCATATGCGGGTGATGCGTGATCTGATAAAGCAGCATCGTTCTCCCATGGAGCTGATGACGATGCTGCGGTGACGTGCGCTTAAACGGGCTGCCCCTGATGCGACATCCGCGTCGCCAGCGGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3855207‑3855060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagccCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTG  >  NC_000913/3855100‑3855238                                                                                                                                                                                                                                                                                                 GTTTGATCCTGACTCCGCACCGCATAGGCGGGTGAGGCGGGCTCTGATATGGCAGCATCGTTCTCCCATGGAGCTGCTGACGATGCTGCGGTGACGTCCGCTTAAACGGGCTGCCCCTGATGCGACATCCGCGTCGCCAGCGG                                                                                                                                                  <  2:98258/143‑1   TTTATTCTTACTCCGCACCGCATATGCGGGTGATGCGTGATCTGATAAAGCAGCATCGTTCTCCCATGGAGCTGATGACAACAAATCATTATGGTTCGCTTACACGGGCTGCCCCTGATGCGACATCCGCGTCGCCAGCGGCA                                                                                                                                                >  1:342928/1‑143                                                                                                              GCTGCCCCTGATGCGACATCCGCGTCGCCAGCGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAA                                          <  1:448804/138‑1                                                                                                              GCTGCCCCTGATGCGACATCCGCGTCGCCAGCGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAA                                          >  2:448804/1‑138                                                                                                               CTGCCCCTGATGCGACATCCGCGTCGCCAGCGGCAGCCCGTTTAAGCGCACATCACCGCAACATCGTCATCAGCTCCATGGGAGAACGATGCTGCCTTCCCCGAGCACGCATCACCCGCATATGCCGCGCGCACGAAGAATAc                                    >  2:189301/1‑142                                                                                                                                       CGCCAGCGGCGGCCCGTTTACCCGCACGCCCTCCACGCATCGTCATGAGCTCCATGGGACACCGATGCTGCTTTAGCAGATCACCCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGC            <  2:232969/143‑1                                                                                                                                        attAGCTGCAGCTCGATTAAGCGCACGCCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCA           <  1:197921/140‑1                                                                                                                                                 AGCCCGTGTCAGCGCACGGCACCGCAGCAGCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTG  <  1:98258/143‑1                                                                                                                                                                                                                                                                                                 GTTTTATTCTTACTCCGCACCGCATATGCGGGTGATGCGTGATCTGATAAAGCAGCATCGTTCTCCCATGGAGCTGATGACGATGCTGCGGTGACGTGCGCTTAAACGGGCTGCCCCTGATGCGACATCCGCGTCGCCAGCGGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3855207‑3855060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagccCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAAAGCACGCTGTCTG  >  NC_000913/3855100‑3855238

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.