New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3855060 =	37 (1.560)	4 (0.180)	4/250	NT	9.9%	coding (1139/1185 nt)	emrD	multidrug efflux pump EmrD
	?	NC_000913	3855100 =	38 (1.690)					coding (1179/1185 nt)	emrD	multidrug efflux pump EmrD

GGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGA  >  NC_000913/3854918‑3855200                                                                                                                                               |                                                                                                                                             cgCACGGCGGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGTGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGGCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGtgctgtgctg                                                                                                                                              <  1:262905/142‑1 (MQ=255)    cagacagcgtgctttgtgcgggctatcaggcgttttattcttactccgcaccgcatatgcgggtgatgcgtgatctgataaagcagcatcgttctcccatggagctgatgacgctgctgcggtgccgtgcgctgacacgGGCt                                                                                                                                           <  1:98258‑M1/4‑1 (MQ=255)      ggCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGc                                                                                                                                         <  2:273858/143‑1 (MQ=255)           gcgcgcTGGTCGGCGGTCTGCAAGACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTg                                                                                                                                    <  2:267253/143‑1 (MQ=255)            cgcgcTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCCCTgg                                                                                                                                   >  1:252188/1‑143 (MQ=255)            cgcgcTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGGTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTgg                                                                                                                                   <  2:256201/143‑1 (MQ=255)            cgcgcTGGGCGGCGGTCCGCCAAACCTTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTgg                                                                                                                                   <  2:2854/143‑1 (MQ=255)             tgctttgtgcgggctatcaggcgttttattcttactccgcaccgcatatgcgggtgatgcgtgatctgataaagcagcatcgttctcccatggagctgatgacgatgctgcggtggcgtgcgcttaatcgAGCTGCagctaat                                                                                                                                  <  1:197921‑M1/13‑4 (MQ=255)              gctttgtgcgggctatcaggcgttttattcttactccgcaccgcatatgcgggtgatgggtgatctgctaaagcagcatcggtgtcccatggagctcatgacgatgcgtggagggcgtgcgggtaaacgGGCCGCCGCTGGCg                                                                                                                                 <  2:232969‑M1/14‑1 (MQ=255)                   gTCGGTGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGGcgcg                                                                                                                            >  1:126685/1‑143 (MQ=255)                          gTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCg                                                                                                                     >  1:22193/1‑143 (MQ=255)                            cTGCAACACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCa                                                                                                                   <  1:61340/143‑1 (MQ=255)                                 aaaCATGGGTGTCGGCGTGCTGGCGTCGCTCGCTGCGATGTTGCCGCAAACGGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAgg                                                                                                              <  2:49720/143‑1 (MQ=255)                                      gtattcttcgtgcgcgcggcatatgcgggtgatgcgtgctcggggaaggcagcatcgttctcccatggagctgatgacgatgttgcggtgatgtgcgcttaaacgGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAg                                                                                                         >  2:189301‑M1/106‑143 (MQ=255)                                       tGGTTCCGGCGTGTTGGCGTCGCTCTCTGCGATGTTGCCGCAACCCGGTCAGGGCAGCCTGGTGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGc                                                                                                        <  2:118445/143‑1 (MQ=255)                                           tacGGCGTGTTGGCGTCGGCCTGCGGGATGCGGCCGCAAAGCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGt                                                                                                    <  1:252084/141‑1 (MQ=255)                                            ttactccgcaccgcatatgcgggtgatgcgtgatctgataaagcagcatcgttctcccatggagctgatgacgatgctgcggtgacgtgcgcttaaacgGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGc                                                                                                        >  2:448804‑M1/100‑138 (MQ=255)                                            ttactccgcaccgcatatgcgggtgatgcgtgatctgataaagcagcatcgttctcccatggagctgatgacgatgctgcggtgacgtgcgcttaaacgGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGc                                                                                                        <  1:448804‑M1/39‑1 (MQ=255)                                            ccGGCGTGCTGGCGGCGCTCGGGGTGAGGGTGCCGCGATCCGGCCGGGGCAGCCGGGGGTTGTTGAGGTCCTTAATGGGATTGTTGATCGTGCTGTGCTGGCGGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGtt                                                                                                   <  2:38540/143‑1 (MQ=255)                                               gggggCTGGGGTCCCGCTCGGCGATGTTGCCGCAAGCCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTaa                                                                                                <  2:232401/139‑1 (MQ=255)                                                   gCTGGGGTCGCTCTCGGCGAGGTTGCCGCAAGCCGGTCAGGGGAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCGGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAgcgc                                                                                            <  2:149384/143‑1 (MQ=255)                                                         gTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCa                                                                                      <  2:129394/143‑1 (MQ=255)                                                         gTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCa                                                                                      >  1:120538/1‑143 (MQ=255)                                                                  tGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCAt                                                                             >  1:406597/1‑143 (MQ=255)                                                                           gctgctgaCCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGACGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAg                                                                    <  2:55560/136‑1 (MQ=255)                                                                           gCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGATGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCCTCATCAg                                                                    >  2:232158/1‑143 (MQ=255)                                                                                   gcGGTCAGGGCAGCCTGGGGGTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATgg                                                            <  1:259796/142‑1 (MQ=255)                                                                                   cctgccggggCCGCGTGGGGTGGTTGAGTCCCTTACTGGGATTGTTGTGCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATgg                                                            <  2:346341/136‑1 (MQ=255)                                                                                   ccGGTCAGGGCAGCCTGGTGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATgg                                                            <  1:88212/143‑1 (MQ=255)                                                                                            gccgCCTGGGGTTGTGGATGACCTTAATGGGGTGGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGGACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGAt                                                   <  2:45922/140‑1 (MQ=255)                                                                                            gCAGCCTGGGGTTGTTGATGACCTGAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCGGCATCGTCATCAGCTCCATGGGAGAACGAt                                                   <  2:80547/143‑1 (MQ=255)                                                                                               cccTGGGGTTGTTGACGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGCTGTCGCATCAGGGGCAGCCCGTTTAAGCGAACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGAtgct                                                <  1:160386/142‑1 (MQ=255)                                                                                                ctgggggGTGGTGATCACCTTAATGGGAGTTTTGAGCGTGGTGTGCTGGCTGCCGCTGGCGCCGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCATCATCAGCTCCATGGGAGAACGAtgctg                                               <  2:159878/140‑1 (MQ=255)                                                                                                             atgaCCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCa                                  >  2:31788/1‑143 (MQ=255)                                                                                                               gaCCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACg                                >  2:129650/1‑143 (MQ=255)                                                                                                                aCCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGc                               <  1:357478/143‑1 (MQ=255)                                                                                                                    tAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCa                           >  1:82031/1‑143 (MQ=255)                                                                                                                    tAATGGGATTGGTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCa                           <  2:432684/143‑1 (MQ=255)                                                                                                                         ggATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGc                      <  2:72992/143‑1 (MQ=255)                                                                                                                          gATTGTTGATGCTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCa                     <  2:19233/143‑1 (MQ=255)                                                                                                                           aTTGTTGATCGTGCTGTGCAGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTGACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATACTGCTTTATCAGAGCAAGAATCAGCCGCat                    >  2:262722/1‑143 (MQ=255)                                                                                                                            ttgttgATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCata                   <  1:317584/143‑1 (MQ=255)                                                                                                                                 gATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGCACGATGCTGCTTTATCAGATCACGCCTCACCCGCATCtgcgg              >  2:257956/1‑143 (MQ=255)                                                                                                                                         tgtgctgGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATCTGCGGTGCGGAga      >  2:390719/1‑142 (MQ=255)                                                                                                                                           tgctgGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTaa    <  2:22193/143‑1 (MQ=255)                                                                                                                                            gctggctgCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGACACCGCAGCTGCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAg   <  1:469063/143‑1 (MQ=255)                                                                                                                                             ctggctgCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGa  <  2:180702/143‑1 (MQ=255)                                                                                                                                             ctggctgCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGa  >  1:439321/1‑143 (MQ=255)                                                                                                                                             ctggctgCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGGAAGa  >  1:311969/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                             GGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGGCGACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGA  >  NC_000913/3854918‑3855200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.