New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1798348	8 (0.460)	4 (0.250)	3/284	NT	26.3%	pseudogene (574/1476 nt)	arpB	pseudogene, ankyrin repeats
	?	CP009273	= 1798532	15 (0.930)					pseudogene (758/1476 nt)	arpB	pseudogene, ankyrin repeats

GGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1798253‑1798348 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctattctgcGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCCACAGGTAATAGGGGCAGAATAGCAATTGCACAGTTGCGAACATATCTATCAGCCCAGGTCTGAGCATCGG  <  CP009273/1798532‑1798292                                                                                                                                                                                                                                                                                                                                                   GGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGC                                                                                                                                           >  2:29712/1‑200   GGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGC                                                                                                                                           >  1:308121/1‑198     CTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGAT                                                                                                                                       <  1:29712/200‑1       TTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGAT                                                                                                                                       <  2:308110/198‑1                                                                                           TTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCCACAGGTAATAGGGGCAGAATAGCAATTGCACAGTTGCGAACATATCTATCAGCCCAGGTCTGAGCA      >  2:146974/1‑243                                                                                               GCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCCACAGGTAATAGGGGCAGAATAGCAATTGCACAGTTGCGAACATATCTATCAGCCCAGGTCTGAGCATCGG  <  1:146977/243‑1                                                                                                                                                                                                                                                                                                                                                   GGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1798253‑1798348 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctattctgcGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCCACAGGTAATAGGGGCAGAATAGCAATTGCACAGTTGCGAACATATCTATCAGCCCAGGTCTGAGCATCGG  <  CP009273/1798532‑1798292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.