| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1798348 | 8 (0.460) | 4 (0.250) | 3/284 | NT | 26.3% | pseudogene (574/1476 nt) | arpB | pseudogene, ankyrin repeats |
| ? | CP009273 | = 1798532 | 15 (0.930) | pseudogene (758/1476 nt) | arpB | pseudogene, ankyrin repeats | |||||
ATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGA > CP009273/1798179‑1798589 | attaaattaTGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGCGCTATTTTCGCGGGTATTGCATCCCGAATGCCAt > 1:337243/1‑230 (MQ=255) aattaTGTTGTGTCCGTTTACGAACCGAACTATTCCAACGTGGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGTCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGCAGTTCCAGTGGCTATTTTCGCGTGTATTGCATCACGAATGCCATTTGc < 2:337231/230‑1 (MQ=255) aaCGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCACCTATTACCTGTGGGTGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCAGTTGCCCCTATACATCCATCGGCAATATTTCTAATATTGGCAACAGGCGACTCTCCACAACTGATTTCATTTTTCa > 2:186783/1‑274 (MQ=255) tACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCGCGATGCTCAGACCTGGGCTCATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGt < 1:186787/275‑1 (MQ=255) cACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGAACTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTACAGGGGCTATTTTCGCGGGTATTGCATCa > 1:325179/1‑149 (MQ=255) ggggCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaacaacattgc > 2:29712‑M1/1‑96 (MQ=255) ggCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaacaacattgc > 1:308121‑M1/1‑94 (MQ=255) ggCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTcgcg > 1:61065/1‑132 (MQ=255) ggCTTTCTTTCGCCTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGAAATTGCTATTCTGCCCCTATTCCATGTGGGAGTCCCAGGGGCTATTTTCGCGGGTACTTCATTGAGAATGCCGTTTGCCCATATACAGCAATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTATCAACAGCTTATTACATTATTCAACCAGTTGCACATACTCCCTGACAAAGAAATCATTGaaagacgaac > 2:53494/1‑268 (MQ=255) ctttctttCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaacaacattgccgat < 1:29712‑M1/200‑109 (MQ=255) ttctttcGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaacaacattgccgat < 2:308110‑M1/198‑109 (MQ=255) ttctttcGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTa < 2:61063/132‑1 (MQ=255) ccGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCgc < 1:146977‑M2/243‑3 (MQ=255) tGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCgcagaa > 2:146974‑M2/1‑237 (MQ=255) atagataTGTTCGCAACTGTGCAATTGCTATTCTGcc > 2:178299/1‑37 (MQ=255) atatGTTCGCAACTGTGCAATTGCTATTCTGCCCCTa < 1:178303/37‑1 (MQ=255) ttCTGCgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaacaacattgccgatggatgtataggggcaaatggcattcgtgatgcaatacccgcgaaaatagcccctggaactcccacaggtaataggggcagaatagcaattgcacagttgcgaacatatctatcagcccaggtctgagca > 2:146974‑M1/1‑6 (MQ=255) gcgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaacaacattgccgatggatgtataggggcaaatggcattcgtgatgcaatacccgcgaaaatagcccctggaactcccacaggtaataggggcagaatagcaattgcacagttgcgaacatatctatcagcccaggtctgagcatcgg < 1:146977‑M1/243‑242 (MQ=255) | ATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGA > CP009273/1798179‑1798589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |