New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 1798348 | 8 (0.460) | 4 (0.250) | 3/284 | NT | 26.3% | pseudogene (574/1476 nt) | arpB | pseudogene, ankyrin repeats |
? | CP009273 | = 1798532 | 15 (0.930) | pseudogene (758/1476 nt) | arpB | pseudogene, ankyrin repeats |
CCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTCACTGGTAGATAATCACATCATTCATGAAGATAATCTGGTTAAATTACTGCAAACTAAAAGTGCTAACGAAACACCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAAC > CP009273/1798292‑1798763 | ccGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCgc < 1:146977‑M2/243‑3 (MQ=255) tGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCgcagaa > 2:146974‑M2/1‑237 (MQ=255) cgGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCg > 2:95562/1‑159 (MQ=255) tATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTgg < 1:95564/159‑1 (MQ=255) atcGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCgcagaatagcaattgcacagttgcgaacatatctatcagcccaggtctgagcatcgggacctgaactgatgaacttatcaagcgaaagaaag < 1:29712‑M2/200‑93 (MQ=255) atcGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCgcagaatagcaattgcacagttgcgaacatatctatcagcccaggtctgagcatcgggacctgaactgatgaacttatcaagcgaaagaa < 2:308110‑M2/198‑91 (MQ=255) ggCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAAAAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACg > 2:284436/1‑167 (MQ=255) gCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCgcagaatagcaattgcacagttgcgaacatatctatcagcccaggtctgagcatcgggacctgaactgatgaacttatcaagcgaaagaaagcccc > 2:29712‑M2/1‑104 (MQ=255) gCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCgcagaatagcaattgcacagttgcgaacatatctatcagcccaggtctgagcatcgggacctgaactgatgaacttatcaagcgaaagaaagcc > 1:308121‑M2/1‑104 (MQ=255) aTGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGaa < 1:284447/167‑1 (MQ=255) tctcAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTatgatg > 2:30734/1‑117 (MQ=255) aaCAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACg < 1:30734/117‑1 (MQ=255) tattCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGTCTATGATGAACGGACATACt > 1:34726/1‑110 (MQ=255) tattCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTCACTGGTAGATAATCACATCATTCATGAAGATAATCTGGTTAAATTACTGCAAACTAAAAGTGCTAACGAAACACCTGGAc > 1:68241/1‑225 (MQ=255) ttCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTatga > 2:2717/1‑94 (MQ=255) cAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACa < 2:34726/110‑1 (MQ=255) cAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTCACTGGTAGATAATCACATCATTCATGAAGATAATCTGGTTAAATTACTGCAAACTAAAAGTGCTAACGAAACACCTGGACTTta < 2:68239/225‑1 (MQ=255) aaCAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGaa < 1:2717/94‑1 (MQ=255) ttGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTCACTGGTAGATAATCACATCATTCATGAAGATAATCTGGTTAAATTACTGCAAACTAAAAGTGCTAACGAAACACCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAAc < 1:53496/275‑1 (MQ=255) tGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGc > 1:29425/1‑79 (MQ=255) cATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTatg < 2:29425/79‑1 (MQ=255) aCTCCCTGAAAAAGAATTCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGc > 1:251168/1‑72 (MQ=255) ccTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTatg < 2:251160/72‑1 (MQ=255) cgcAGTATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAAtt > 2:116758/1‑86 (MQ=255) | CCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTCACTGGTAGATAATCACATCATTCATGAAGATAATCTGGTTAAATTACTGCAAACTAAAAGTGCTAACGAAACACCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAAC > CP009273/1798292‑1798763 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |