New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2519336	15 (0.870)	4 (0.240)	3/288	NT	18.1%	coding (880/927 nt)	yfeR	transcriptional regulator of yefH
	?	CP009273	= 2519435	22 (1.340)					coding (781/927 nt)	yfeR	transcriptional regulator of yefH

CTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2519287‑2519336 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcattACGCCGGTTGTTGAACGCCAGTTGATGCTGGTGCGCAGGAAGAACCGTTCACTTTCCACCGCCGCTGAAGCTTTATGGGACGTGGTACGAGACCAGGGCAATGCGCTAA  <  CP009273/2519435‑2519327                                                                                                                                                                 CTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTACGCCGGTTGTTGAACGCCAGTTGATGCTGGTGCGCAGGAAGAACCGTTCACTTTCCACCGCCGCTGAAGCTTTATGGGACGTG                           >  1:152976/1‑134 CTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTACGCCGGTTGTTG                                                                                                  >  1:163030/1‑63     ATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTACGCCGGTTGTTGAACGCCAGTTGATGCTGGTGCGCAGGAAGAACCGTTCACTTTCCACCGCCGCTGAAGCTTTATGGGACGTGGTAC                       <  2:152972/134‑1     ATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTACGCCGGTTGTTGAACG                                                                                              <  2:163026/63‑1                AACGGATCCCCTTCCCGCCCAGCCATTAGCGCATT                                                                                                               >  1:220109/1‑35                                               CATTACGCCGGTTGTTGAACGCCAGTTGATGCTGGTGCGCAGGAAGAACCGTTCACTTTCCACCGCCGCTGAAGCTTTATGGGACGTGGTACGAGACCAGGGCAATGCGCTAA  >  1:280760/1‑113                                               CATTACGCCGGTTGTTGAACGCCAGTTGATGCTGGTGCGCAGGAAGAACCGTTCACTTTCCACCGCCGCTGAAGCTTTATGGGACGTGGTACG                      >  2:240547/1‑93                                                                                                                                                                 CTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2519287‑2519336 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcattACGCCGGTTGTTGAACGCCAGTTGATGCTGGTGCGCAGGAAGAACCGTTCACTTTCCACCGCCGCTGAAGCTTTATGGGACGTGGTACGAGACCAGGGCAATGCGCTAA  <  CP009273/2519435‑2519327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.