New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2519336	15 (0.870)	4 (0.240)	3/288	NT	18.1%	coding (880/927 nt)	yfeR	transcriptional regulator of yefH
	?	CP009273	= 2519435	22 (1.340)					coding (781/927 nt)	yfeR	transcriptional regulator of yefH

GGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCGGCTACCATCGGGAACAGCGTCGCCGGATGTCCAATCTCCTGCACAATATTCGCCTGAATACCATTGCGCGCCAGCGCTGCGTCAATCAGCGGTCGGCTGCCTGACGCGTAATCCTGCAACACCAATTTCGCTCCCTGTAATGCCTGCCAGGGTACA  >  CP009273/2519196‑2519670                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                            gggCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACTAGTGGGCTACCTTCAGGCa                                                                                                                                                                                                          <  1:270013/275‑1 (MQ=255)                                  cTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTACCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGCGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTgatgc                                                                                                                                                                         >  1:122618/1‑275 (MQ=255)                                                                  ccGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTCGGCTCCCTTCAGGCAATGGTAGCGCCATCGCGGGAAGAATAATGATCCCGCTGCCTGCGGCTCCCNTACGGAAACGCGt                                                                                                                                          >  2:241279/1‑274 (MQ=255)                                                                                                       aTACAACGGATCCCCTTCCCGCCCAGCTATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCATACGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGAAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCCGCTCCCATCGGGAACAGCGTAGCCGGCTGTCCAATCTCCTGCACAATATTCGCCTgc                                                                                                     >  1:200450/1‑273 (MQ=255)                                                                                                       aTACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCa                                                                                                                                                                                              >  1:204/1‑185 (MQ=255)                                                                                                           aaCGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGc                                                                                                                                                                                          <  2:204/185‑1 (MQ=255)                                                                                                           aaCGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGATTTACGCCCAGTGGGCTNCCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCGGATACCATCGGGAACAGCGTCGCCGACTGTCCAATCTCCTGCCAAATATTCGCCTGAATAc                                                                                                 >  1:306619/1‑274 (MQ=255)                                                                                                             cGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCGGCTACCATCGGGaa                                                                                                                                                >  1:285673/1‑225 (MQ=255)                                                                                                                 tCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGGCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCGGCTACCATCGGGAACAGc                                                                                                                                            <  2:285662/225‑1 (MQ=255)                                                                                                                                gCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGt                                                                                                                                                                                                                                             >  2:280749/1‑113 (MQ=255)                                                                                                                                    ttAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTaatg                                                                                                                                                                                                                                         >  1:280760‑M2/1‑109 (MQ=255)                                                                                                                                                    gTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGt                                                                                                                                                                                                                                             >  1:240554/1‑93 (MQ=255)                                                                                                                                                        cGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTaatg                                                                                                                                                                                                                                         >  2:240547‑M2/1‑89 (MQ=255)                                                                                                                                                         gTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTaatgcgctaatggctgggcgggaaggggatccgttgtatcagatat                                                                                                                                                                                               <  2:152972‑M2/134‑47 (MQ=255)                                                                                                                                                             cACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTaatgcgctaatggctgggcgggaaggggatccgttgtatcagatatagag                                                                                                                                                                                           >  1:152976‑M2/1‑84 (MQ=255)                                                                                                                                                               cGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCGGCTACAATCGGGAACAGCGTCGCCGGATGTCCAATCTCCTGCACAATATTCGCCTGAATAcc                                                                                                >  2:147870/1‑223 (MQ=255)                                                                                                                                                                gTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCg                                                                                                                                                              >  2:291653/1‑160 (MQ=255)                                                                                                                                                                   ccATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCGGCTACAATCGGGAACAGCGTCGCCGGATGTCCAATCTCCTGCACAATATTCGCCTGAATACCATTg                                                                                            <  1:147873/223‑1 (MQ=255)                                                                                                                                                                    cATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCGGCTa                                                                                                                                                          <  1:291664/160‑1 (MQ=255)                                                                                                                                                                               atcggcggTCGAAATTGAACGGTTCTTCCTGCGCACCAGCATCAGCTGCCGTTCAACAACCGGCGTACTGCGCTTTACCACCAGTGGGCTANCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCGGCTACCATCGGGAACAGCGTCGCCGGATGTCCAATCTCCTGCACAATATTCGCCTGAATACCATTGCGCGCCAGCGCTGCGTCAATCAGCGGTCGGCTGCCTGACCAGAAATCCTGCAACACCAATTTCg                            <  1:231369/273‑1 (MQ=255)                                                                                                                                                                                        ggAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCGGCTACCATCGGGAACAGCGTCGCCGGATGTCCAATCTCCTGCACAATATTCGCCTGAATACCATTGCGCGCCAGCGCTGCGTCAATCAGCGGTCGGCTGCCTGACGCGTAATCCTGCAACACCAATATCGCTCCCtat                    >  1:17110/1‑272 (MQ=255)                                                                                                                                                                                                aaCGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGNAGCGCCAGTGCGGGAAGACTACTGATGCCGATGCCTGCGGCTACCATCGGGAACAGCGTCGCCGGATGTCCAATCTCCTGCACAATATTCGCCTGAATACCATTGCGCGCCAGCGCTGCGTCAATCAGCGGTCGGCTGCCTGACGCGTAATCCTGCAACACCAATTTCGCTCCCTGTAAtgcc              <  1:241286/272‑1 (MQ=255)                                                                                                                                                                                                aaCGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAAACGGCGTAATGCGCTTTACCACAAGTGGGCTACCTTCAGGCAATGGTAGCGCCCGTGCGGGAAGAATACTGATGCCGATGCCTGCGGCTACCATCGGGAACAGCGTCg                                                                                                                                        >  1:238900/1‑150 (MQ=255)                                                                                                                                                                                                     ttcttcCTGCGCACCAGCAGCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCgg                                                                                                                                                                                        >  1:269529/1‑97 (MQ=255)                                                                                                                                                                                                        ttcCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCGGCTACCATCGGGAACAGCGTCGCCGGATGTCCAATCTcc                                                                                                                       >  1:51587/1‑159 (MQ=255)                                                                                                                                                                                                         tcCTGCGCACCATCATCAACTGGCTTTCAACAACCGGCGTAATGCGCTTTACCCCCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGTATACTGATGCCGATGCCTGCGGCTACCATCGGGAACAGCGTCGCCGGATGTCCAATCTCCTGCACAATATTCGCCTGAATACCATTGCGCGCCAGCGCTGCGTCAATCAGCGGTCGGCTGCCTGACGCGTAATCCTGCAACACCAATTTCGCTCCCTGTAATGCCTGCCAGGGTACa  <  1:179513/275‑1 (MQ=255)                                                                                                                                                                                                         tcCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGgaag                                                                                                                                                                                    <  2:269519/97‑1 (MQ=255)                                                                                                                                                                                                            tGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCGGCTACCATCGGGAACAGCGTCGCCGGATGTCCAATCTCCTGca                                                                                                                   <  2:51586/159‑1 (MQ=255)                                                                                                                                                                                                                                cGTTCAACAACCGGCGTaatgcgctaatggctgggcgggaaggggatccgttgtatcagatat                                                                                                                                                                                               <  2:163026‑M2/63‑47 (MQ=255)                                                                                                                                                                                                                                    caacaaCCGGCGTaatgcgctaatggctgggcgggaaggggatccgttgtatcagatatagag                                                                                                                                                                                           >  1:163030‑M2/1‑13 (MQ=255)                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                            GGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCGGCTACCATCGGGAACAGCGTCGCCGGATGTCCAATCTCCTGCACAATATTCGCCTGAATACCATTGCGCGCCAGCGCTGCGTCAATCAGCGGTCGGCTGCCTGACGCGTAATCCTGCAACACCAATTTCGCTCCCTGTAATGCCTGCCAGGGTACA  >  CP009273/2519196‑2519670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.