| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2519336 | 15 (0.870) | 4 (0.240) | 3/288 | NT | 18.1% | coding (880/927 nt) | yfeR | transcriptional regulator of yefH |
| ? | CP009273 | = 2519435 | 22 (1.340) | coding (781/927 nt) | yfeR | transcriptional regulator of yefH | |||||
CGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCGGCTACCATCGGGAACAGCGTCGCCGGATGTCCAATCTCCTGCACAATATTCGCCTGAATAC > CP009273/2519176‑2519575 | cGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTCCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAAc < 1:138892/214‑1 (MQ=255) gggCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACTAGTGGGCTACCTTCAGGCa < 1:270013/275‑1 (MQ=255) cTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTACCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGCGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTgatgc > 1:122618/1‑275 (MQ=255) ccGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTCGGCTCCCTTCAGGCAATGGTAGCGCCATCGCGGGAAGAATAATGATCCCGCTGCCTGCGGCTCCCNTACGGAAACGCGt > 2:241279/1‑274 (MQ=255) ctctATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTacgccggttgttgaacgccagttgatgctggtgcgcaggaagaaccgttcactttccaccgccgctgaagctttatgggacgtg > 1:152976‑M1/1‑50 (MQ=255) ctctATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTacgccggttgttg > 1:163030‑M1/1‑50 (MQ=255) ctctATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTc > 1:13109/1‑83 (MQ=255) atatCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTacgccggttgttgaacgccagttgatgctggtgcgcaggaagaaccgttcactttccaccgccgctgaagctttatgggacgtggtac < 2:152972‑M1/134‑89 (MQ=255) atatCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTacgccggttgttgaacg < 2:163026‑M1/63‑18 (MQ=255) atatCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAgcg < 2:13109/83‑1 (MQ=255) aTACAACGGATCCCCTTCCCGCCCAGCTATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCATACGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGAAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCCGCTCCCATCGGGAACAGCGTAGCCGGCTGTCCAATCTCCTGCACAATATTCGCCTgc > 1:200450/1‑273 (MQ=255) aTACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGaaa > 2:96756/1‑86 (MQ=255) aTACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCa > 1:204/1‑185 (MQ=255) aaCGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGa < 1:96758/86‑1 (MQ=255) aaCGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGc < 2:204/185‑1 (MQ=255) aaCGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGATTTACGCCCAGTGGGCTNCCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCGGATACCATCGGGAACAGCGTCGCCGACTGTCCAATCTCCTGCCAAATATTCGCCTGAATAc > 1:306619/1‑274 (MQ=255) aaCGGATCCCCTTCCCGCCCAGCCATTAGCGCATT > 1:220109‑M1/1‑35 (MQ=255) cGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCGGCTACCATCGGGaa > 1:285673/1‑225 (MQ=255) gATCCCCTTCCCGCCCAGCCATTAGCGCATTGccc < 2:220103/35‑1 (MQ=255) tCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGGCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCGGCTACCATCGGGAACAGc < 2:285662/225‑1 (MQ=255) gCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGt > 2:280749/1‑113 (MQ=255) ttAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTaatg > 1:280760‑M2/1‑109 (MQ=255) cATTacgccggttgttgaacgccagttgatgctggtgcgcaggaagaaccgttcactttccaccgccgctgaagctttatgggacgtggtacgagaccagggcaatgcgctaa > 1:280760‑M1/1‑4 (MQ=255) cATTacgccggttgttgaacgccagttgatgctggtgcgcaggaagaaccgttcactttccaccgccgctgaagctttatgggacgtggtacg > 2:240547‑M1/1‑4 (MQ=255) aTTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTg > 2:222938/1‑67 (MQ=255) | CGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGCGTTCAACAACCGGCGTAATGCGCTTTACCACCAGTGGGCTACCTTCAGGCAATGGTAGCGCCAGTGCGGGAAGAATACTGATGCCGATGCCTGCGGCTACCATCGGGAACAGCGTCGCCGGATGTCCAATCTCCTGCACAATATTCGCCTGAATAC > CP009273/2519176‑2519575 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |