New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3503194	18 (1.040)	4 (0.240)	3/298	NT	16.8%	coding (1142/1164 nt)	yhfX	putative pyridoxal 5'‑phosphate binding protein
	?	CP009273	= 3503367	22 (1.300)					coding (969/1164 nt)	yhfX	putative pyridoxal 5'‑phosphate binding protein

TCACTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3503148‑3503194 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaAACTGTGGATGACAGCAGTATCGACTACACCCTGCCGCTGGCAGGCGAGTTTCCGGTAAGCAGTGCAGTGGTGCTCTGTTTTCGCACGCAGATTTTTGTCACCCGTAGCGATGTGGTGCTGGTGTCCGGTATTCATCGTG  <  CP009273/3503367‑3503228                                                                                                                                                                                             TCACTCACACCACAAATCGCGCCATTACACCCCCAGAGAGTTTCCAAAACTGTGGATGACAGCAGTATCGACTACACGCTGCCGCTGGCAGGCGAGTTTCCGGTAAAAAGTGCAGTGGTACTCTGTTTTCGCACGCAGATTTTTTTCAACCGTAGCGATGTGGTGCTGGTTTACGGTct          >  2:44470/1‑177 TCACTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAAACTGTGGATGACAGCAGTATCGACTACACCCTGCCGCTGGCAGGCGAGTTTCCGGTAAGCAGTGCAGTGGT                                                                      >  1:119405/1‑119     TAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAAACTGTGGATGACAGCAGTATCGACTACACCCTGCCGCTGGCAGGCGAGTTTCCGGTAAGCAGTGCAGTGGTGCTC                                                                  <  2:119403/119‑1     TAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAAACTGTGGATGACAGCAGTATCGACTACACCCTGCCGCTGGCAGGCGAGTTACCGGTAAGCAGTGCAGTGGTGCTCTGTTTTCGCACGCAGAGTTTTGTCACCCGTAGCGATGTGGTGCTGGTGTCCGGTATTCAT      <  1:44471/179‑1                                              AAAACTGTGGATGACAGCAGTATCGACTACACCCTGCCGCTGGCAGGCGAGTTTCCGGTAAGCAGTGCAGTGGTGCTCTGTTTTCGCACGCAGATTTTTGTCACCCGTAGCGATGTGGTGCTGGTGTCCGGTATTCATCGTG  <  1:972/142‑1                                                                                                                                                                                             TCACTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3503148‑3503194 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaAACTGTGGATGACAGCAGTATCGACTACACCCTGCCGCTGGCAGGCGAGTTTCCGGTAAGCAGTGCAGTGGTGCTCTGTTTTCGCACGCAGATTTTTGTCACCCGTAGCGATGTGGTGCTGGTGTCCGGTATTCATCGTG  <  CP009273/3503367‑3503228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.