New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3503194	18 (1.040)	4 (0.240)	3/298	NT	16.8%	coding (1142/1164 nt)	yhfX	putative pyridoxal 5'‑phosphate binding protein
	?	CP009273	= 3503367	22 (1.300)					coding (969/1164 nt)	yhfX	putative pyridoxal 5'‑phosphate binding protein

GCCCCAGGTTGCGGAATCTGACGGCTGCATATCGCCTGGCGCATAACCCAATGCGTTGATTAGCCCCAGCGTCTCCAGCGTTGGTAGCTGCAAATGCGGCAACTGGCTCAGGATGTGACCACATGTATTCGCTCCCGCATCTTGCGGACGCACCAGCGTGACATCTTTCATTGCCCCTACGCCAAAGCTATCAATCACTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATGACCA  >  CP009273/3502954‑3503433                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                gCCCCAGGGGGGGGACTCTTACGTCTGCATCTCGCCTGGCGAATCACCCCATTCGTTGATTAGTCCCAGCGTCTCCAGCGTTGGTAGCTGCAAAGGCGGCAACTGTCTCAGGATGTGACCACATGTATTCGCTCCCGCATCTTGCTGACGCACCAGCGTGACATCTTTCATTGCCCCTACGCCAAAGCTATCAATCACTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGcc                                                                                                                                                                                                               <  2:23405/275‑1 (MQ=255)         ttGCGGAATCTGACGGCTGCAGATCGCCTGGCGCATAACCCAATGCGTTGATTAGCCCCAGCGTCTCCAGCGTTGGTAGCTGCAAATGCGGCAACTGGCTCAGGATGTGACCACATGTATTCGCTCCCGCATCTTGCGGACGCACCAGCGTGACATCTTTCATTGCCCCTACGCCAAAGCTATCAATCACTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGaa                                                                                                                                                                                                       <  1:140115/275‑1 (MQ=255)                                                                ccccAGCGTCTCCAGCGTTGGTAGCTGCAAATGCGGCAACTGGCTCAGGATGTGACCACATGTATTCGCTCCCGCATCTTGCGGACGCACCAGCGTGACATCTTTCATTGCCCCTACGCCAAAGCTATCAATCACTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAACCTGCGTCCGAAAAc                                                                                                                                                 >  1:88788/1‑274 (MQ=255)                                                                ccccAGCGTCTCCAGCGTTGGTAGCTGCAAATGCGGCAACTGGCTCAGGATGTGACCACATGTATTCGCTCCCGCATCTTGCGGACGCACCAGCGTGACATCTTTCATTGCCCCTACACCAAAGCTATCAATCACTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGCATTTCATAACGACCGACGATTTCCGGTTCGCCACGCTGAATACCGGACACCAGCCCCACATCGCAAAGAGTCACAAACATCagctatggaaaaa                                                                                                                                                 >  1:152932/1‑264 (MQ=255)                                                                                                                actctgcccaattGTATTCGCTCACGCCTCTTGCGCCAGAAACAGCGTGACATTTTTCCTTGCCCCTACTCCAAAGCTATCAATCACTAACACCACAAAGCGCCCCATTACGCCCCCATAGAATTTCCAAGACTGTAATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGTGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGgt                                                                                                <  2:88786/263‑1 (MQ=255)                                                                                                                                ttCGCTCCCGCATCTTGCGGACGCACCAGCGTGACATCTTTCATTGCCCCTACGCCAAAGCTATCAATCACTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATCtgcgtg                                                                                                                                                        >  2:78887/1‑203 (MQ=255)                                                                                                                                    cTCCCGCATCTTGCGGACGCACCAGCGTGACATCTTTCATTGCCCCTACGCCAAAGCTATCAATCACTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATCTGCGTGCGaa                                                                                                                                                    <  1:78889/203‑1 (MQ=255)                                                                                                                                     tCCCGCATCTTGCGAACGCACCAGCGTGACATCTTTCATTGCCCCTACGCCAAAGCTATCAATCACTAACCCCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCa                                                                                                          >  1:50393/1‑244 (MQ=255)                                                                                                                                                                            tGCCCCTACGCCAAAGCTATCAATCACTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATa                                                                                                                                                                                                                                       >  2:309737/1‑80 (MQ=255)                                                                                                                                                                                ccTACGCCAAAGCTATCAATCACTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAAcga                                                                                                                                                                                                                                   <  1:309748/80‑1 (MQ=255)                                                                                                                                                                                          aGCTATCAATCACTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGaca                                                                                                                                                                                              >  2:267920/1‑107 (MQ=255)                                                                                                                                                                                              atcaatcaCTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAg                                                                                                                                                                                          <  1:267930/107‑1 (MQ=255)                                                                                                                                                                                               tcaatcaCTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGc                                                                                                                                            >  2:141597/1‑152 (MQ=255)                                                                                                                                                                                                   tcactcacACCACAAATCGCGCCATTACACCCCCAGAGAGTTTCCAAaactgtggatgacagcagtatcgactacacgctgccgctggcaggcgagtttccggtaaaaagtgcagtggtactctgttttcgcacgcagatttttttcaaccgtagcgatgtggtgctggtttacggtct                                                                                                             >  2:44470‑M1/1‑47 (MQ=255)                                                                                                                                                                                                   tcaCTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAaactgtggatgacagcagtatcgactacaccctgccgctggcaggcgagtttccggtaagcagtgcagtggt                                                                                                                                                                         >  1:119405‑M1/1‑47 (MQ=255)                                                                                                                                                                                                   tcaCTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGcacca                                                                                                                                        <  1:141600/152‑1 (MQ=255)                                                                                                                                                                                                      cTAACACCACAAATCGTGCCATTACTCCCCTAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCATATCGCTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACCGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTgcg          <  1:207649/275‑1 (MQ=255)                                                                                                                                                                                                      cTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGCTGAATACCGGACACCAGCACCACATCGCTCCGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCTAGCGGCAGGGTGTAg                                                                                            >  1:172873/1‑193 (MQ=255)                                                                                                                                                                                                      cTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTgcg          >  1:93142/1‑275 (MQ=255)                                                                                                                                                                                                       tAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAaactgtggatgacagcagtatcgactacaccctgccgctggcaggcgagtttccggtaagcagtgcagtggtgctc                                                                                                                                                                     <  2:119403‑M1/119‑77 (MQ=255)                                                                                                                                                                                                       tAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAaactgtggatgacagcagtatcgactacaccctgccgctggcaggcgagttaccggtaagcagtgcagtggtgctctgttttcgcacgcagagttttgtcacccgtagcgatgtggtgctggtgtccggtattcat                                                                                                         <  1:44471‑M1/179‑137 (MQ=255)                                                                                                                                                                                                               caAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAAAACCAACGCATGTTTCGCCTTAccc  >  2:333534/1‑273 (MQ=255)                                                                                                                                                                                                                                                aaaactgtggatgacagcagtatcgactacaccctgccgctggcaggcgagtttccggtaagcagtgcagtggtgctctgttttcgcacgcagatttttgtcacccgtagcgatgtggtgctggtgtccggtattcatcgtg                                                                                                     <  1:972‑M1/142‑141 (MQ=255)                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                GCCCCAGGTTGCGGAATCTGACGGCTGCATATCGCCTGGCGCATAACCCAATGCGTTGATTAGCCCCAGCGTCTCCAGCGTTGGTAGCTGCAAATGCGGCAACTGGCTCAGGATGTGACCACATGTATTCGCTCCCGCATCTTGCGGACGCACCAGCGTGACATCTTTCATTGCCCCTACGCCAAAGCTATCAATCACTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATGACCA  >  CP009273/3502954‑3503433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.