New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3503194	18 (1.040)	4 (0.240)	3/298	NT	16.8%	coding (1142/1164 nt)	yhfX	putative pyridoxal 5'‑phosphate binding protein
	?	CP009273	= 3503367	22 (1.300)					coding (969/1164 nt)	yhfX	putative pyridoxal 5'‑phosphate binding protein

CTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTG  >  CP009273/3503151‑3503632                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                          cTAACACCACAAATCGTGCCATTACTCCCCTAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCATATCGCTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACCGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTgcg                                                                                                                                                                                                                 <  1:207649/275‑1 (MQ=255) cTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTgcg                                                                                                                                                                                                                 >  1:93142/1‑275 (MQ=255)          caAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAAAACCAACGCATGTTTCGCCTTAccc                                                                                                                                                                                                         >  2:333534/1‑273 (MQ=255)                                                                              cACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTtt                                                                                                                                                                                                                                                                         <  1:972‑M2/142‑3 (MQ=255)                                                                                  aTGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAACTCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGTAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTttggaaactctctgggggcgtaatggcgcgatttgtggtgtta                                                                                                                                                                                                                                <  1:44471‑M2/179‑44 (MQ=255)                                                                                  aTGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTgaga                                                                                                                                                                                                                                                                     <  2:972/142‑1 (MQ=255)                                                                                      agaccGTAAACCAGCACCACATCGCTACGGTTGAAAAAAATCTGCGTGCGAAAACAGAGTACCACTGCACTTTTTACCGGAAACTCGCCTGCCAGCGGCAGCGTGTAGTCGATACTGCTGTCATCCACAGTTttggaaactctctgggggtgtaatggcgcgatttgtggtgtgagtga                                                                                                                                                                                                                            >  2:44470‑M2/3‑132 (MQ=255)                                                                                        aCCTGACACCAGCACCACAGCGCTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAGACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGACATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAAAGCATCGCGa                                                                                                                          <  1:333546/275‑1 (MQ=255)                                                                                                            cGCTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTCGCCACGGAAATGATggg                                                                                                                                                     >  2:14335/1‑228 (MQ=255)                                                                                                              cTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACNAACGCATGTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCctg                                                                                                    >  1:280387/1‑275 (MQ=255)                                                                                                                aCGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTCGCCACGGAAATGATGGGAGAt                                                                                                                                                 <  1:14335/228‑1 (MQ=255)                                                                                                                 cGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTgg                                                                                                                                                                                                                                        >  2:90735/1‑140 (MQ=255)                                                                                                                  gggTGACAAAAATCTGCGTGCGAAAACAGAGCACCACNGCACTGCTNACCGGAAACTCGACTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCCGTAGCTGTCGCCACGGAAATGATGGGAGATTTCa                                                                                                                                             <  1:222091/230‑1 (MQ=255)                                                                                                                    gaaaaaaaaaTCTGACTGCGAAAACAGGTCACCACTGTCCTGCTTTCCGGAAACTCGCCTGCCATCGGCAGGGTGTAGTCGATACTGTTTTCATCCACAGTTTTGGGATTGGTTTCAGTAATCTTTTGATTTTCAGGCGTAAACACCAACGCATGTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGtt                                                                                              <  2:280376/270‑1 (MQ=255)                                                                                                                     tGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTa                                                                                                                                                                                                                                    <  1:90737/140‑1 (MQ=255)                                                                                                                       aCAAAATTCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATg                                                                                                                                                                                                             >  2:192432/1‑161 (MQ=255)                                                                                                                           aaaTCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATGACCa                                                                                                                                                                                                         <  1:192436/161‑1 (MQ=255)                                                                                                                                              gagCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTttggaaactctctgggggcgtaatggcgcgatttgtggtgtta                                                                                                                                                                                                                                <  2:119403‑M2/119‑44 (MQ=255)                                                                                                                                                  accacTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTttggaaactctctgggggcgtaatggcgcgatttgtggtgttagtga                                                                                                                                                                                                                            >  1:119405‑M2/1‑72 (MQ=255)                                                                                                                                                         cactgcTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGAt                                                                                                                                                                                                                                                                    >  2:14949/1‑72 (MQ=255)                                                                                                                                                             gcTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGATTGGt                                                                                                                                                                                                                                                                <  1:14949/72‑1 (MQ=255)                                                                                                                                                              cTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGAt                                                                                                                                                                                                                                                                    >  2:253648/1‑67 (MQ=255)                                                                                                                                                                  ccGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATATTGCTGTCATCCACAGTTTTGAGATTGGt                                                                                                                                                                                                                                                                <  1:253656/67‑1 (MQ=255)                                                                                                                                                                                                 gTCGATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTCGCCACGGAAATGATGGGAGAtt                                                                                                                                                >  1:133225/1‑148 (MQ=255)                                                                                                                                                                                                     agaCTGCTGTCATCCACATTGTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATTACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTCGCCACGGAAATGATGGGAGAATTCAc                                                                                                                                            <  2:133223/146‑1 (MQ=255)                                                                                                                                                                                                      tACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAAt                                                                                     >  1:57891/1‑202 (MQ=255)                                                                                                                                                                                                       aCTGCTTTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGAGACGTTCAGGCTGATCGCCNTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTAt                                       >  1:240327/1‑247 (MQ=255)                                                                                                                                                                                                       aCTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCGGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGctgtctctta            >  1:165036/1‑265 (MQ=255)                                                                                                                                                                                                          gctgTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTg                                                                                 <  2:57889/202‑1 (MQ=255)                                                                                                                                                                                                                aTCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTTCCGGAAGAGTGCCAGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGCAGTCCAGCTGGTCACtc  >  2:106473/1‑274 (MQ=255)                                                                                                                                                                                                                     caGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATGACCACGACGATAGTAAccg                                                                                                                                                                                          >  2:151858/1‑86 (MQ=255)                                                                                                                                                                                                                         tttGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATGACCACGACGATAGTAAccgccgc                                                                                                                                                                                      <  1:151862/86‑1 (MQ=255)                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                          CTAACACCACAAATCGCGCCATTACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATCTGCGTGCGAAAACAGAGCACCACTGCACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTCGATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCATGTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTG  >  CP009273/3503151‑3503632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.