New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3546050	24 (1.390)	3 (0.180)	3/296	NT	12.2%	intergenic (‑218/‑394)	malP/malT	maltodextrin phosphorylase/mal regulon transcriptional activator
	?	CP009273	= 3546940	20 (1.190)					coding (497/2706 nt)	malT	mal regulon transcriptional activator

TGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3545957‑3546050 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgCCCAGTTGCGGAAGGTTGCGTGACAACACCACCAGGGTGAGATTTTCTGGTTGATGGCGAATAAAGAAGCGCATTGACTCGTGGATCACTGGATTAGTGATCAGATGATAGTCATCGATGACCAGATAAAGTGGGCTATGCCATTCCGCCAGCTCAATGAAAAGCTGGGCGAAGAGTGACGTCAGGCTGGCATATTGCCG  <  CP009273/3546940‑3546741                                                                                                                                                                                                                                                                                                        TGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGCCCAGTTGCGGAAGGTTGCGTGACAACACCACCAGGGTGAGATTTTCTGGTTGATGGCGAATAAAGAAGCGCATTGACTCGT                                                                                                                        >  2:135190/1‑176     CTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGCCCAGTTGCGGAAGGTTGCGTGACAACACCACCAGGGTGAGATTTTCTGGTTGATGGCGAATAAAGAAGCGCATTGACTCGTGGAT                                                                                                                    <  1:135192/176‑1                     TAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGCCCAGTTGCGGAAGGTTGCGTGACAACACCACCAGGGTGAGATTTTCTGGTTGATGGCGAATAAAGAAGCGCATTGACTCGTGGATCACTGGATTAGTGATCAGATGATAGTCATCGATGACCAGATAAAGTGGGCTATGCCATTCCGCCAGCTCAATGAAAAGCTGGGCGAAGAGTGACGTCAGGCTGGCATATTGCCG  >  1:91188/1‑274                                                                                           AATGCCCAGTTGCGGAAGGTTGCGTGACAACACCACCAGGGTGAGATTTTCTGGTTGATGGCGAATAAAGAAGCGCATTGACTCGTG                                                                                                                       <  1:306145/87‑1                                                                                                                                                                                                                                                                                                        TGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3545957‑3546050 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgCCCAGTTGCGGAAGGTTGCGTGACAACACCACCAGGGTGAGATTTTCTGGTTGATGGCGAATAAAGAAGCGCATTGACTCGTGGATCACTGGATTAGTGATCAGATGATAGTCATCGATGACCAGATAAAGTGGGCTATGCCATTCCGCCAGCTCAATGAAAAGCTGGGCGAAGAGTGACGTCAGGCTGGCATATTGCCG  <  CP009273/3546940‑3546741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.