New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3546050	24 (1.390)	3 (0.180)	3/296	NT	12.2%	intergenic (‑218/‑394)	malP/malT	maltodextrin phosphorylase/mal regulon transcriptional activator
	?	CP009273	= 3546940	20 (1.190)					coding (497/2706 nt)	malT	mal regulon transcriptional activator

CTTATCGTTAAAAATAGGTTGTGACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGAGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAATTAAGTAAAGGAGTGAAACAGTTTCATAAGTAAAATATCCAGTGTGCTCCATCTCATTCTTAATAGATTTATTAAGATCATCTTTTTAGATGGCACTTTCATCAGGAATGAAGAAGAAACCCTTGCTTAAATGAATCTGATGAACATAAGGGAAACCAGTATTCACGCTGGATCAGCGTCGTTTTAGGTGAGTTGTTAATAAAGATT  >  CP009273/3545806‑3546298                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                         cTTATCGTTAAAAATAGGTTGTGACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGAGTAGGCAGGGAGGAGTTGCGGGGATGAGCAAGGAAATGTGTGCTCAACAACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCACAGACAAACTGTACCTAAGTGCAAAAAATGGCCGGTGCGTATTTTCAAAAAGCGGAAgga                                                                                                                                                                                                                            >  2:18650/1‑274 (MQ=255)            aaaTAGGTTGTGACATAGGAGTTCCAGTTTTCTTAAATTTTCAACACAACGTTATCGCTGGTTTGCGAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGAGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAACCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATaaa                                                                                                                                                                                                                 <  1:205472/275‑1 (MQ=255)                     aggaaattggtgTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGTTAGTTTGGCAGGCTCGATGTTGACCTTCCTCAGCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGAGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAAgtaagtaa                                                                                                                                                                                                         <  2:228936/263‑1 (MQ=255)                                  tCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGAGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCACTGCAATACAGCGCCGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTAAAAATTAAGTAAAACAATGAAACAga                                                                                                                                                                                           >  2:17016/1‑274 (MQ=255)                                  tCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGAGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAATTAAGTAAAGGAGTGAAACAGt                                                                                                                                                                                           >  1:109627/1‑275 (MQ=255)                                  tCCACTTTTCTTAGACTTTCAACTTAACGATATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGAGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCNGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTATATAAATTaa                                                                                                                                                                                                             >  1:228942/1‑257 (MQ=255)                                        tttCTTAGATTTTAAAAACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGAGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAATTAAGTAAAGGAGTGAAACAGTTTCAt                                                                                                                                                                                      <  1:17016/274‑1 (MQ=255)                                                                                           gacatgccTCATCCTGCGGGGGATGAGGCAGGGAGGAGTTGCGGGGATGAGAAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAATTAAGTAAAGGAGTGAAACAGTTTCATAAGTAAAATATCCAGTGTGCTCCATCTCATTCTTAATAGATTTATTAAGat                                                                                                                                   <  2:109625/268‑1 (MQ=255)                                                                                               ttCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGAGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAATTAGGTAAAGGAGTGAAACAGTTTCAt                                                                                                                                                                                      >  1:322634/1‑219 (MQ=255)                                                                                                    cATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGAGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAATTAAGTAAAGGAGTGAAACAGTTTCATAAGTAAAATATCCAGTGTGCTCCATCTCATTCTTAATAGATTTATTAAGATCATCttttt                                                                                                                          <  1:78663/274‑1 (MQ=255)                                                                                                                                                        tgATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGcccagttgcggaaggttgcgtgacaacaccaccagggtgagattttctggttgatggcgaataaagaagcgcattgactcgt                                                                                                                                                                        >  2:135190‑M1/1‑94 (MQ=255)                                                                                                                                                          aTCTCAACCACTTAAAGCTGGTGCAAACCACAGGATTAGCAAAAAATAAATGAAATACAGAGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGGAACTCTATAAATTAAGTAAAGGAGTGAAACAGTTTCATAAGTAAAATATCCAGTGTGCTCCATCTCATTCTTAATAGATTTATTAAGATCATCTTTTTAGATGGCACTTTCATCAGGAATGAAGAAGAAACCCTTGCTTAAATGAATCtgat                                                                    <  1:18650/274‑1 (MQ=255)                                                                                                                                                            ctcAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGcccagttgcggaaggttgcgtgacaacaccaccagggtgagattttctggttgatggcgaataaagaagcgcattgactcgtggat                                                                                                                                                                    <  1:135192‑M1/176‑87 (MQ=255)                                                                                                                                                                            tAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGcccagttgcggaaggttgcgtgacaacaccaccagggtgagattttctggttgatggcgaataaagaagcgcattgactcgtggatcactggattagtgatcagatgatagtcatcgatgaccagataaagtgggctatgccattccgccagctcaatgaaaagctgggcgaagagtgacgtcaggctggcatattgccg                                                  >  1:91188‑M1/1‑74 (MQ=255)                                                                                                                                                                               tGCAAACCACAGGATTAGCATCAAATCACTGCAATACAGCGCATCAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCaa                                                                                                                                                                                                                                        >  1:245509/1‑89 (MQ=255)                                                                                                                                                                                   aaCCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAg                                                                                                                                                                                                                                    <  2:245501/89‑1 (MQ=255)                                                                                                                                                                                                gCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAATTAAGTAAAGGAGTGAAACAGTTTCATAAGTAAAATATCCAGTGTGCTCCATCTCATTCTTAATAGATTTATTAAGATCATCTTTTTAGATGTCACTTTCATCAGGAATGCAGAAGAAACCCTTGCTTAAATGAATCTGATGAACATAAGGGAAACCAGTATTCACGCTGGATCAGcgac                             >  1:82380/1‑273 (MQ=255)                                                                                                                                                                                                     aaatcaaTGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCta                                                                                                                                                                                                                     >  2:20489/1‑86 (MQ=255)                                                                                                                                                                                                         caaTGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATaaa                                                                                                                                                                                                                 <  1:20489/86‑1 (MQ=255)                                                                                                                                                                                                                      cgcAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAATTaa                                                                                                                                                                                                             >  2:136682/1‑77 (MQ=255)                                                                                                                                                                                                                      cgcAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAATTaa                                                                                                                                                                                                             >  2:173811/1‑77 (MQ=255)                                                                                                                                                                                                                          gAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAATTAAGTaa                                                                                                                                                                                                         <  1:173815/77‑1 (MQ=255)                                                                                                                                                                                                                          gAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAATTAAGTaa                                                                                                                                                                                                         <  1:136684/77‑1 (MQ=255)                                                                                                                                                                                                                           aaaaTCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAATTAAGTAAAGGAGTGAAACAGTTTCATAAGTAAAATATCCAGTGTGCTCCATCTCATTCTTAATAGATTTATTAAGATCATCTTTTTAGATGGCACTTTCATCAGGAATGAAGAAGAAACCATTGCTTAAATGAATCTGATGAACATAAGGGAAACCAGTATTCACGCTGGATCAGCGTCGTTTTAGGTGAGTTGTTAATAAAGAtt  >  1:70400/1‑275 (MQ=255)                                                                                                                                                                                                                                         aGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAATTAAGTAAAGGAGTGAAACAGTTTCATAAGTAAAATATc                                                                                                                                                                          >  2:320452/1‑93 (MQ=255)                                                                                                                                                                                                                                             cAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAATTAAGTAAAGGAGTGAAACAGTTTCATAAGTAAAATATCCAgt                                                                                                                                                                      <  1:320464/93‑1 (MQ=255)                                                                                                                                                                                                                                              aaaaaaTGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAATTAAGTAAAGGAGTGAAACAGTTTc                                                                                                                                                                                        >  2:186240/1‑74 (MQ=255)                                                                                                                                                                                                                                                  aaTGcccagttgcggaaggttgcgtgacaacaccaccagggtgagattttctggttgatggcgaataaagaagcgcattgactcgtg                                                                                                                                                                       <  1:306145‑M1/87‑84 (MQ=255)                                                                                                                                                                                                                                                  aaTGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAATTAAGTAAAGGAGTGAAACAGTTTCATaa                                                                                                                                                                                    <  1:186244/74‑1 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                         CTTATCGTTAAAAATAGGTTGTGACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGAGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGTAACTCTATAAATTAAGTAAAGGAGTGAAACAGTTTCATAAGTAAAATATCCAGTGTGCTCCATCTCATTCTTAATAGATTTATTAAGATCATCTTTTTAGATGGCACTTTCATCAGGAATGAAGAAGAAACCCTTGCTTAAATGAATCTGATGAACATAAGGGAAACCAGTATTCACGCTGGATCAGCGTCGTTTTAGGTGAGTTGTTAATAAAGATT  >  CP009273/3545806‑3546298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.