New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3546050	24 (1.390)	3 (0.180)	3/296	NT	12.2%	intergenic (‑218/‑394)	malP/malT	maltodextrin phosphorylase/mal regulon transcriptional activator
	?	CP009273	= 3546940	20 (1.190)					coding (497/2706 nt)	malT	mal regulon transcriptional activator

AACCAACGGTCACTGTGCGATATGTGAGACGATGGCGCAAAAACGGCAATATGCCAGCCTGACGTCACTCTTCGCCCAGCTTTTCATTGAGCTGGCGGAATGGCATAGCCCACTTTATCTGGTCATCGATGACTATCATCTGATCACTAATCCAGTGATCCACGAGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCCGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCGGGAATCAATGCCAG  >  CP009273/3546698‑3547189                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                          aaccaacGGTCACTGTGCGATATGTGAGACGATGGCGCAAAAACGGCAATATGCCAGCCTGACGTCACTCTTCGCCCAGCTTTTCATTGAGCTGGCGGAATGGCATAGACCACTTTATCTGGTCATCGATGACTATCCTCTGATCACTAATCCAGTGATCCACGAGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCACACCCAGATGGTGTTTTCAAGCAACCTTCCGCAACTGGCCATTGCCAATCGGCGTGTTCGTGATCAAcgc                                                                                                                                                                                                                            >  2:79467/1‑272 (MQ=255)                          gagaCGATGGCGCAAAAACGGCAATATGCCAGCCTGACGTCACTCTTCGCCCAGCTTTTCATTGAGCTGGCGGAATGGCATAGCCCACTTTATCTGGTCATCGATGACTATCATCTGATCACTAATCCAGTGATCCACGAGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTACGCAACTGGGCATTGCCAATCTGCTTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGc                                                                                                                                                                                                  >  1:49500/1‑275 (MQ=255)                               gATGGCGCAAAAACGGCAATATGCCAGCCTGACGTCACTCTTCGCCCAGCTTTTCATTGAGCTGGCGGAATGGCATAGCCCACTTTATCTGGTCATCGATGACTATCATCTGATCACTAATCCAGTGATCCACGAGTCAATGCGCTTCTTTAGTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCgt                                                                                                                                                                                                                                           >  1:323865/1‑229 (MQ=255)                                   gcgcAAAAACGGCAATATGCCAGCCTGACGTCACTCTTCGCCCAGCTTTTCATTGAGCTGGCGGAATGGCATAGCCCACTTTATCTGGTCATCGATGACTATCATCTGATCACTAATCCAGTGATCCACGAGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTc                                                                                                                                                                                                                                       <  2:323853/229‑1 (MQ=255)                                            cGGCAATATGCCAGCCTGACGTCACTCTTCGCCCAGCTTTTCATTGAGCTGGCGGAATGGCATAGCCCACTTTATCTGGTCATCGATGACTATCATCTGATCACTAATCCAGTGATCCACGAGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGcattttttgcacttagatacagattttctgcgctgtattgcattgatttgatgctaatcctgtggtttgcacta                                                                                                                                                                                 >  1:91188‑M2/1‑200 (MQ=255)                                                                                          aGCTGGCGGAATGGCATAGCCCACTTTATCTGGTCATCGATGACTATCATCTGATCACTAATCCAGTGATCCACGAGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCAACAGGAAGCGAAGCAGTATTTGGATGGCCTTCTTTCATCGCCgtgttaaacccca                                                                                                                                  >  2:257197/1‑263 (MQ=255)                                                                                             tGGCGGAATGGCATAGCCCACTTTATCTGGTCATCGATGCCTATCATCTGATCACTAATCCAGTGATCCACGAGTCAATGCGCTTCTTTANTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCCGCAGa                                                                                                                                <  1:257205/274‑1 (MQ=255)                                                                                                                            cATCGATGACTATCATCTGATCACTAATCCAGTGATCCACGAGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGaaa                                                                                                                                                                                                                     >  1:198000/1‑158 (MQ=255)                                                                                                                                gATGACTATCATCTGATCACTAATCCAGTGATCCACGAGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTgg                                                                                                                                                                                                                 <  2:197995/158‑1 (MQ=255)                                                                                                                                                tCACTTATCCCGTGATCCACGAGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCCGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTa                                                                            <  1:79469/275‑1 (MQ=255)                                                                                                                                                      aTCCAGTGATCCACGAGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTAccc                                                                                                                                                                                          >  2:305100/1‑159 (MQ=255)                                                                                                                                                          aGTGATCCACGAGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCa                                                                                                                                                                                      <  1:305111/159‑1 (MQ=255)                                                                                                                                                              aTCCACGAGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGcattttttgcacttagatacagattttctgcgctgtattgcattgatttgatgctaatcctgtggtttgcactagctttaagtggttgag                                                                                                                                                                 <  1:135192‑M2/176‑91 (MQ=255)                                                                                                                                                              aTCCACGAGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCCGCAGACAGCACTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCTCCCTCTcct                                                               >  1:20207/1‑273 (MQ=255)                                                                                                                                                                 cACGAGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGcatt                                                                                                                                                                                                                                                       <  1:306145‑M2/87‑5 (MQ=255)                                                                                                                                                                 cACGAGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTAcc                                                                                                                                                                                           >  1:105459/1‑147 (MQ=255)                                                                                                                                                                  aCGAGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGcattttttgcacttagatacagattttctgcgctgtattgcattgatttgatgctaatcctgtggtttgcactagctttaagtggttgagatca                                                                                                                                                             >  2:135190‑M2/1‑82 (MQ=255)                                                                                                                                                                     aGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCa                                                                                                                                                                                                                                                   <  2:306134/87‑1 (MQ=255)                                                                                                                                                                     aGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATc                                                                                                                                                                                       <  2:105457/147‑1 (MQ=255)                                                                                                                                                                      gTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGt                                                                                                                                                                                                                                     >  1:18361/1‑100 (MQ=255)                                                                                                                                                                          aTGCGCTTCTTTATTCGCCATCAACCAGAAGATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATc                                                                                                                                                                                                                                 <  2:18361/100‑1 (MQ=255)                                                                                                                                                                                                           ctcACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGGTCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCCGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCCGCAGAAAGCAGTCGGATTTGCGCTGACGTTTCCGGtt                                                                                                >  1:66524/1‑196 (MQ=255)                                                                                                                                                                                                                 cTGGTGGTGTTGTCACGCAACCTTCCGCAACTggg                                                                                                                                                                                                                                                           <  2:241010/35‑1 (MQ=255)                                                                                                                                                                                                                          ttgtCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCCGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCGGGAATCAATgcccg  >  1:63067/1‑273 (MQ=255)                                                                                                                                                                                                                            gtCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTg                                                                                                                                                              >  2:144132/1‑117 (MQ=255)                                                                                                                                                                                                                                cGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGt                                                                                                                                                          <  1:144135/117‑1 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                          AACCAACGGTCACTGTGCGATATGTGAGACGATGGCGCAAAAACGGCAATATGCCAGCCTGACGTCACTCTTCGCCCAGCTTTTCATTGAGCTGGCGGAATGGCATAGCCCACTTTATCTGGTCATCGATGACTATCATCTGATCACTAATCCAGTGATCCACGAGTCAATGCGCTTCTTTATTCGCCATCAACCAGAAAATCTCACCCTGGTGGTGTTGTCACGCAACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCCGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCGGGAATCAATGCCAG  >  CP009273/3546698‑3547189

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.