New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4521187 =	20 (1.160)	4 (0.240)	3/298	NT	16.1%	coding (282/1122 nt)	sgcX	putative endoglucanase with Zn‑dependent exopeptidase domain
	?	CP009273	4521459 =	22 (1.300)					coding (10/1122 nt)	sgcX	putative endoglucanase with Zn‑dependent exopeptidase domain

GCGCAAAATAGAGCCGTCTGGATTTTTACGCTTTGAACGCGTAGGCGGTCCTGCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4521244‑4521187 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGACTGGTCGAATAATTGTGAGAACGTTCACGTGAAAACGCGCAAAGCTGAAC  >  CP009273/4521459‑4521573                                                                                                                                                                               GCGCAAAATAGAGCCGTCTGGATTTTTACGCTTTGAACGCGTAGGCGGTCCTGCGCAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGACTGGTCGAATAATTGTGAGAACGTTCACGTGAAAACGCGCAAAGCT      >  1:131193/1‑169 GCGCAAAATAGAGCCGTCTGGATTTTTACGCTTTGAACGCGTAGGCGGTCCTGCGCAGAAAATGACATAGCTATCTCCGTAGACCGTAA                                                                                      >  2:184592/1‑89     AAAATAGAGCCGTCTGGATTTTTACGCTTTGAACGCGTAGGCGGTCCTGCGCAGAAACTGACATAGCTATCTCCGTAGACCGTAAAACA                                                                                  <  1:184596/89‑1     AAAATAGAGCCGTCTGGATTTTTACGCTTTGAACGCGTAGGCGGTCCTGCGCAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGACTGGTCGAATAATTGTGAGAACGTTCACGTGAAAACGCGCAAAGCTGAAC  <  2:131191/169‑1                 TCTGGATTTTTACGCTTTGAACGCGTAGGCGGTCCTGCGC                                                                                                                       >  1:189652/1‑40                                                                                                                                                                               GCGCAAAATAGAGCCGTCTGGATTTTTACGCTTTGAACGCGTAGGCGGTCCTGCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4521244‑4521187 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGACTGGTCGAATAATTGTGAGAACGTTCACGTGAAAACGCGCAAAGCTGAAC  >  CP009273/4521459‑4521573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.