New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4521187 =	20 (1.160)	4 (0.240)	3/298	NT	16.1%	coding (282/1122 nt)	sgcX	putative endoglucanase with Zn‑dependent exopeptidase domain
	?	CP009273	4521459 =	22 (1.300)					coding (10/1122 nt)	sgcX	putative endoglucanase with Zn‑dependent exopeptidase domain

CCTAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATCCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGAACCAGCCATAGTGACCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTATTTTGCGCACCATAAAACCGACTTCATCCATATGCGCAAAAATCATCAGTCGCAGCGCATCGGGTTTATCACTACCGTAGCGCGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGCATTGTGCTGCAAAAGCGA  >  CP009273/4520918‑4521438                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                            ccTAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATCCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTACGTGCGCTCGTCGCCTTTGNCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGAACCAGCCATAGTGAccctgt                                                                                                                                                                                                                                                         >  1:258729/1‑270 (MQ=255)           cGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATCAGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGCAGGTGACTGCGTGCGCTCGTCGCCTTTGTCACAGTGGTCGGACTTAATGCCGCTACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGAACCCGGCATAGTGACCGGCGCAGGAACGCCt                                                                                                                                                                                                                                              >  1:97532/1‑275 (MQ=255)                                                                           aGGCGTACCGACCTGAATGCCCATCCGTATAGCGTCGTCTTTGTCTTTGGCACCAATNTCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTAGCCCTTTGTCCCCGGTGAGGGTGACGATGGAACCAGCCATAGTGACCTGCGCAGGACCGCCTCCGCGTTCAAAGCGTAAAAATCCAGACGGc                                                                                                                                                                                                                <  1:234116/241‑1 (MQ=255)                                                                                                             tcgtcTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCCCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGTTACACCCCATGACTGCCCCTTTGTCCCCGGTGTGGGTGACGATGGAACCACCCATAGTGACCTGCGCACGCCCGCCTACGCGTTCAAAGCGTAACAACTCATACTGCCCTATTCTGCGCACAATCAACCCGACTCCTACAATTCTCGCAAAAATTCTCAGTTCCACCGCCTCgg                                                                                                                                             >  2:110667/1‑274 (MQ=255)                                                                                                             tcgtcTTTGTCTTTGGCACCAATAGCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACCCCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGAACCAGCCATAGTGACCTCCGCAGGACCGCCTACGCGTNCAAAGCGTAAAAATCCAGACGGCTCTATTTTGCGCACCCTAAAACCGACTTCATCCATATGCGCAAAAATAATCAGTCGCAGCGCATCgg                                                                                                                                             >  1:231417/1‑274 (MQ=255)                                                                                                                          tgGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTTCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGGTGGAACCAGCCATAGTGACCTGCNCAGGACCGCCTACGCGGTCAAAGCGTAAAAATACAGAAGGCCATATTTTGCGAACCCTAAAACCGCCTTCATCCATATGCGCAAAAATCATAAGTCGCAGCGCATCGGGGTTAtaaatcaca                                                                                                                               >  1:286703/1‑267 (MQ=255)                                                                                                                             cACCAATATCAATCCACAGTTTGTCGGTAGAATGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAAGGCCGATACAACCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGAACCAGCCATAGTGACCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTATTTTGCGCACCATAAAACCGACTTCATCCATATGCGCAAAAATCATCAGTCGCAGCGCATCGGGTTTATCACTACCGTAg                                                                                                                            <  1:110669/275‑1 (MQ=255)                                                                                                                                                  tGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGAACCAGCCATAGTGACCTgcg                                                                                                                                                                                                                                                         >  1:86538/1‑129 (MQ=255)                                                                                                                                                      gACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGAACCAGCCATAGTGACCTGCGCAgg                                                                                                                                                                                                                                                     <  2:86536/129‑1 (MQ=255)                                                                                                                                                           gttcagctttgcgcgttttcacgtgaacgttctcacaattattcgaccagtctgcgcctataaaacgctcaacgagtgattgttttacggtctacggagatagctatgtcattttCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTAtttt                                                                                                                                                                                                        <  2:131191‑M1/54‑1 (MQ=255)                                                                                                                                                               agctttgcgcgttttcacgtgaacgttctcacaattattcgaccagtctgcgcctataaaacgctcaacgagtgattgttttacggtctacggagatagctatgtcattttCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTATTTTgcgc                                                                                                                                                                                                    >  1:131193‑M1/112‑169 (MQ=255)                                                                                                                                                                                                        tAATGCCGATCCACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGAACCAGCCATAGTGACCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTATTTTGCGCACCATAAAACCGACTTCATCCATATGCGCAAAAATCATCAGTCGCAGCGCAt                                                                                                                                                >  1:332772/1‑180 (MQ=255)                                                                                                                                                                                                            gCCGATACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGAACCAGCCATAGTGACCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTATTTTGCGCACCATAAAACCGACTTCATCCATATGCGCAAAAATCATCAGTCGCAGCGCATCggg                                                                                                                                            <  2:332760/180‑1 (MQ=255)                                                                                                                                                                                                                aTACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGAACCAGCCATAGTGACCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTAttt                                                                                                                                                                                                         >  1:330311/1‑115 (MQ=255)                                                                                                                                                                                                                aTACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGAACCAGCCATAGTGACCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTATTTTGCGCACCATAAAACCGACTTCATCCATATGCGCAAAAATCATCAGTCGCAGCGCATCGGGTTTATCACTACCGTAGCGCGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAg                                                           >  1:39430/1‑257 (MQ=255)                                                                                                                                                                                                                    acCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGAACCAGCCATAGTGACCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTATTTTgcg                                                                                                                                                                                                     <  2:330299/115‑1 (MQ=255)                                                                                                                                                                                                                        cATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGAACCAGCCATAGTGACCTgc                                                                                                                                                                                                                                                          >  2:330239/1‑58 (MQ=255)                                                                                                                                                                                                                            aCTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGAACCAGCCATAGTGACCTGCGCAg                                                                                                                                                                                                                                                      <  1:330251/58‑1 (MQ=255)                                                                                                                                                                                                                                     ttGTCCCCGGTGAGGGTGACGATGGAACCAGCCATAGTGACCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTAttt                                                                                                                                                                                                         >  2:145674/1‑94 (MQ=255)                                                                                                                                                                                                                                         ccccGGTGAGGGTGACGATGGAACCAGCCATAGTGACCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTATTTTgcg                                                                                                                                                                                                     <  1:145677/94‑1 (MQ=255)                                                                                                                                                                                                                                           tgttttacggtctacggagatagctatgtcagtttCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTAtttt                                                                                                                                                                                                        <  1:184596‑M1/54‑1 (MQ=255)                                                                                                                                                                                                                                           ccGGTGAGGGTGACGATGGAACCAGCCATAGTGACCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTATTTTGCGCACCATAAAACCGACTTCATCCATATGCGCAAAAATCATCAGTCGCAgcg                                                                                                                                                   >  2:331315/1‑142 (MQ=255)                                                                                                                                                                                                                                               ttacggtctacggagatagctatgtcattttCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTATTTTgcgc                                                                                                                                                                                                    >  2:184592‑M1/32‑89 (MQ=255)                                                                                                                                                                                                                                               tGAGGGTGACGATGGAACCAGCCATAGTGACCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTATTTTGCGCACCATAAAACCGACTTCATCCATATGCGCAAAAATCATCAGTTGCAGCGCATc                                                                                                                                               <  1:331327/142‑1 (MQ=255)                                                                                                                                                                                                                                                        cGATGGAACCAGCCATAGTCACCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTATTTTGCGCACCATAAAACCGACTTCATCCATATGCGCAAAAATCATCAGTCGCAGCGCATCGGGTTTATCACTACCGTAGCGCGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACGTCAGCGCCAGCGTTTTCGTGTCCTTAAATCGCATTGTGCTGCAAAAGCga  >  1:276761/1‑274 (MQ=255)                                                                                                                                                                                                                                                              aaCCAGCCATAGTGACCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTAttt                                                                                                                                                                                                         >  1:72081/1‑69 (MQ=255)                                                                                                                                                                                                                                                                  aGCCATAGTGACCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTATTTTgcg                                                                                                                                                                                                     <  2:72079/69‑1 (MQ=255)                                                                                                                                                                                                                                                                            aCCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATc                                                                                                                                                                                                                        >  2:189648/1‑40 (MQ=255)                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                            CCTAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATCCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGATGGAACCAGCCATAGTGACCTGCGCAGGACCGCCTACGCGTTCAAAGCGTAAAAATCCAGACGGCTCTATTTTGCGCACCATAAAACCGACTTCATCCATATGCGCAAAAATCATCAGTCGCAGCGCATCGGGTTTATCACTACCGTAGCGCGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGCATTGTGCTGCAAAAGCGA  >  CP009273/4520918‑4521438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.